| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4985 |
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| Symbol | |
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| ID | 3518915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 5296489 |
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| End bp | 5301093 |
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| Gene Length | 4605 bp |
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| Protein Length | 1534 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637287424 |
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| Product | sensory box protein |
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| Protein accession | YP_271624 |
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| Protein GI | 71278464 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTAAGA GATTACTTAT TTCCTGTCGA CTATTGTTAA GTATTTTTTT TAGCGTTATT
TTTTTTAGCG TTATTTTCAT TGGCGGCATT GTCGCATCTA GCACCAGTTA TGCTGCAATA
GAAAACCTTT CCCTAGAGCT TCTTTCTGTT GATGATGGTT TGTCACAAGG TAGTATTCAT
TCAATTATTC AAGACAAAGC AGGTTTCATT TGGCTAGGTA CTGAAAGTGG CGTCAATGTT
TATGATGGTA ATGAAGTTAG GCAATTGCCA GGACCCAAAA ATAGTTTTGA AAATGTTGCT
ATATACAATG TACTTGAAGA TAAAAATGGT TTTATTTGGT TAAATGTTGA TGGTCGAAAA
CTTTATTGTT ATAAGCCTAA AACAGATAGT TATCAGCATA TCCCAATAAA ACTTGCGCAA
GGCTTTGATT ACTATATTAG GGACTTGATT AATGATTATG ACAATAAAAT ATGGGTGTTA
ACATCAAAAA CGCTCGGTGT TTATAATCAA GTTACTGACG AGTACAAGCA AGTAGTAGAT
TTAGAATCAG AATTAGCAGG TAATTTATCA CTATTTCAGA TGTCATTGTA TGATGGCGTG
ATCTACCTGG CTTCTAAGAT AGGTATTTTT GCTTATGATA TTGAGAAAAA TCATTGGAAA
AAACTACCGC AAATACCCGC TGATATATCT AAGCAATCAA GCATTGAAGA ACTTAATAAA
ATATATACTG TACATGCAGA TAACAATCAT ACTTTATATT TAGGCTCCTT CGATGGTTTT
TTTGCTATAA ACGTAGCTGA TATTAAAGCA TATATTGCGG AAAAATCGCA ATTACCAAAC
TACCAAAAAC TTATTGAAAA TATGGCCGCA TGGCAGACCT TACTTGATGG CGAAATGCTT
TATGTAGCCT CTGATAAAGG TTTGTATGTT ATTAATACAC TCAATAATAG TAGTGAGTTC
TTGTTTGGTT TTAGTGATTA TTTTGACAAT ATTACCGATG ACAACATACA TACATTGATT
AAAGATAATC ACGGAGTTTT CTGGTTAGGC TCAAATACTG CAGGGGCTTA TCAATGGGAC
CCTCAAAAAG AATTAGTTAA AAACTATGGT TATAAAAAAA ATAATCCCGC TAGTTTGAGT
TATAACGAAG TGTGGCATGC TTTACCTGAC AGCCTCAATA ATGATTTACT TTGGGTTGCT
ACCTCAAATG GTTTGAACTT AATTGATCTA ACTAAGCAGC AAGTGACTCC CTTTTTGGTG
AATGATGACT CCAAAAGCAT CTATACCCAG AGCCATATTT ATAGTTTAGT GACGTTATCG
CCTGAGCAGT TACTTGTCTC TACTGCTCAA GGTGTACTTC TATTTGATAA AAAGCAGGAG
AAAACATTAG CATTACCCTT TAATGATGAA GTTAATCAGC TGCTGGCATT AGAGCAATTT
GACATTCTAA AAGAAGGTGA TTTCTTATGG TTAACGAATG AAAAAGGTAT TTTTAGAATA
AACTTAATTA CTTATCAAGT TGATACGTTA AGTGAAATTA CGACTCAGTT TTCCCCTGAA
CGTTTATTGT ATTTCTTGGG CTCATTACCA AATAGTGATT GGTTTTTACT CACCAGTAAT
GATGGTTTAT GGGGCTTTAA TGTCAATACA CGAGAATTTG TACAGCTTTA TCAACTGGAA
GGGATACTCG CAGGTGAAAA CGTTTATATC GATAACTGGG CGATTGATAA AAACCAAGTG
CTCTGGTTGA GCTACAGTGG TAAAGGCCTT ATTGGTTTAA CATTACCTGA TTTTAAAGAA
AAATATTTTT ACCATAAAGC TAACTCCATT ATTGAAAATA ACGTTTATGG TGTCATGGCA
GATGAATCTG GGGATATCTG GTTCTCTAGT CATGATGGTA TATTTATGTT GGATTCTGAT
AACCAACATA TAAGTCATTT CACTCGTAAA AATGGTCTTG GAGCGACAGA ATTTAATGCT
AGGGCTAATG CAAAATTAGC GAATGGTTTA TTTGTCTATG GTTCTATGGA GGGGATTAGT
CTTTTTGACC CTTTACAGCT AAAAAAAATA TATGATAATG AAAATATTAC AGTCAAAGTT
ACCGCCGTAG AATTATTATC TCGAGATTTA GTCCTACCTT TAGTCATTGA AAATAATGCT
GTTATTAACC TAAACCATGA TGATGTAGGT ATTCGTATTG ATTTCTCTAC TTTTTCTTAC
GGTAATGAGA AAAGCATCAT CTATAAATAT CATTTAACGG GACAAGACAA CATTGATTTT
CCGGCAAGTC GTGAGGCTCA TGTTACCTTT CCTAGTCTCG CTTCAGGTAA ACATACTTTA
TCAATTCAAG CTAAATCTCC TTATACAGGA GAGTTCTCTT CGCCTGTATA TATTAAATTT
AACGTAGGCT TTGCTCCATG GCGTTCACCT TTAGCGATAT TACTTTATTC TATCGCCTTA
ATGTTAATGA TGGTGACTTG GTATCGTTAT CGTAAAACCC AGCAACAATT ATTACTTGAT
GTTCATGAGC AAGTAAAATA TCGAGAAAAC CGCTTACAAC TAGCCTTAAC GGGTAGTAAC
AGTGAGGTCT GGGATTGGCA AGCCGATGAA GACTTAATAT TTGGCAAGCG TATTTCTTTA
GATTTAGGTT ACCGAGAAAA AGCGCTGTTT TATAGTTTAG AAGAGCATGT AGCGCTTATT
CATCCTGAAG ATCATGATAA TTTTATTCAT TGTTGGCAGC TATTTATTAG TAGCGCTAAT
CTAAAGGATA ACTTTTCCTG TACCTATCGT TTGAAAACAT CAGATGGTCA GTGGTTTTGG
TATAAAGATT TAGGAAAAAT TGTTGCTGTA GATGCTAATA ATCATCCTGT CAGAGTGACA
GGATCTTATA CTAATATTAC CGAGTCGCGC GCTAATGAAG AGCGCGCTCA GTATTACGGA
GATGCCTTTC AGCAAACCCA AGATTGGGTA TTTATTATTG ATGAAAAAAT ATCCCGAATC
ACTGCAAACC AGTCAATGCG TGCTGTTTTT GATTGGCCAG AAGAAGAGTT TGATTTTAGT
GACAAACTCT TAGGCGTCAG CCAGAAACGT CGCAGTTTTT ATCGTAAATT AATGCTTTCG
CTAAAAGAGG GGGAGCATTG GCGTGGAGAA GAGTTGATAG TTACCGCCAA TAAGGATGAA
TACCACGTCA TTATTAACGT CACGGTAGGG TTTAGTTCAG TAACTAATGC GTTACATTAT
TTGTTTGTTT TAACGGATAT TAGCGCGCAG AAAAGTGCGG AAAGTGAATT GCGATTATTA
GCAAATTATG ACCATTTAAC CGGATTACCC AATCGTACGT TATTACTTGA ACGTATTAAG
CATGCGATAG ATTTTTCTAA TCGACGAGAT ACCTCCATTG CGGTATTTTT TATTGATCTT
GATCGATTTA AGCAAGTTAA TGATTCTTTA GGGCATGATT TCGGTGATTT ATTATTACGA
GAAATCACTA ATCGCTTACA AAGTACATTA CGCATCGATG ATACGGTAGC ACGTATAGGA
GGTGACGAAT TTGTTGTGCT ACTAGAGAGT TTCGCTAATG AAAATCAATT GGGAAGAATT
GCAGAGAAAG TTATTGACAC CATTGGTCAA TCCGTTGATT TAGATGGAAA TTTAGTTAGT
GTTGGTGCAA GTGTAGGCAT TGCGCTATAC CCTAATGATG GTATTAATTC AGACGAATTA
TTACGCCATG CTGATGTTGC TATGTATCAT GCGAAACAAG CCGGAAAAAG TAACTTTAAA
TTTTATACTG CACAAATGAA CGTTGAAGCA ATGGAGCGCT TGAGTCAGGA GTCGGCATTA
AAATTAGCAG TAAAAAATAA TGAGTTTATC AATCACTACC AACCTATTAT TAATGCTTAT
ACGGGTAAGG CTGTGGGAGT CGAGATGTTA ATGCGTTGGC AAACGTCTAC TGGCTTAGTG
CCACCAAGTG ACTTTATTCC TTTATCAGAA GAGCTCAATT TAATCATCAC GATGACAGAA
ATGGCACTTG AGCGAGTATG TAAAGATCTA AAAGAATGGC ATACCATACG ACCTGAATTT
TATGTGTCGA TAAACTTATC AGTACAACAC TTTGTTGAAG CAGACATAGT CTCATTTATT
AGTGAGTTAT TGGCACGTTA CCAATTACCT GCAGCAATAT TACGTGTTGA AGTAACAGAG
AGTTCGCTAA TTTTACAACC TGAAAATGCC ATCACCACCA TGCGTAAGTT ATCTTCACTA
GGTCTTACTT TAGCGCTTGA TGATTTTGGC ACTGGTTTTT CGTCATTGTC TTATTTAAAA
AAGTTACCTT TAGATATTAT AAAAATTGAC CGTAGCTTTG TTGCTGGTAT TGGTATAAAT
GAAGCAGATG AAGCGATTGT TGATACCACG CTAGTATTAG CAAAAAGACT TAACATGCAT
TGTATTGCAG AAGGTGTAGA AACGGTTGAG CAATTTAATT ATTTAGTGGC CAAACAATGT
CATTATCTAC AAGGTTATTT ATATAGTAAG CCAAGCTCAG CGGAAAAGAT TATGAAAAAT
TTGCTGATAG ATAAGACAGA ACTTACTTAT AGCCAAGCCC TTTGA
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| Protein sequence | MLKRLLISCR LLLSIFFSVI FFSVIFIGGI VASSTSYAAI ENLSLELLSV DDGLSQGSIH
SIIQDKAGFI WLGTESGVNV YDGNEVRQLP GPKNSFENVA IYNVLEDKNG FIWLNVDGRK
LYCYKPKTDS YQHIPIKLAQ GFDYYIRDLI NDYDNKIWVL TSKTLGVYNQ VTDEYKQVVD
LESELAGNLS LFQMSLYDGV IYLASKIGIF AYDIEKNHWK KLPQIPADIS KQSSIEELNK
IYTVHADNNH TLYLGSFDGF FAINVADIKA YIAEKSQLPN YQKLIENMAA WQTLLDGEML
YVASDKGLYV INTLNNSSEF LFGFSDYFDN ITDDNIHTLI KDNHGVFWLG SNTAGAYQWD
PQKELVKNYG YKKNNPASLS YNEVWHALPD SLNNDLLWVA TSNGLNLIDL TKQQVTPFLV
NDDSKSIYTQ SHIYSLVTLS PEQLLVSTAQ GVLLFDKKQE KTLALPFNDE VNQLLALEQF
DILKEGDFLW LTNEKGIFRI NLITYQVDTL SEITTQFSPE RLLYFLGSLP NSDWFLLTSN
DGLWGFNVNT REFVQLYQLE GILAGENVYI DNWAIDKNQV LWLSYSGKGL IGLTLPDFKE
KYFYHKANSI IENNVYGVMA DESGDIWFSS HDGIFMLDSD NQHISHFTRK NGLGATEFNA
RANAKLANGL FVYGSMEGIS LFDPLQLKKI YDNENITVKV TAVELLSRDL VLPLVIENNA
VINLNHDDVG IRIDFSTFSY GNEKSIIYKY HLTGQDNIDF PASREAHVTF PSLASGKHTL
SIQAKSPYTG EFSSPVYIKF NVGFAPWRSP LAILLYSIAL MLMMVTWYRY RKTQQQLLLD
VHEQVKYREN RLQLALTGSN SEVWDWQADE DLIFGKRISL DLGYREKALF YSLEEHVALI
HPEDHDNFIH CWQLFISSAN LKDNFSCTYR LKTSDGQWFW YKDLGKIVAV DANNHPVRVT
GSYTNITESR ANEERAQYYG DAFQQTQDWV FIIDEKISRI TANQSMRAVF DWPEEEFDFS
DKLLGVSQKR RSFYRKLMLS LKEGEHWRGE ELIVTANKDE YHVIINVTVG FSSVTNALHY
LFVLTDISAQ KSAESELRLL ANYDHLTGLP NRTLLLERIK HAIDFSNRRD TSIAVFFIDL
DRFKQVNDSL GHDFGDLLLR EITNRLQSTL RIDDTVARIG GDEFVVLLES FANENQLGRI
AEKVIDTIGQ SVDLDGNLVS VGASVGIALY PNDGINSDEL LRHADVAMYH AKQAGKSNFK
FYTAQMNVEA MERLSQESAL KLAVKNNEFI NHYQPIINAY TGKAVGVEML MRWQTSTGLV
PPSDFIPLSE ELNLIITMTE MALERVCKDL KEWHTIRPEF YVSINLSVQH FVEADIVSFI
SELLARYQLP AAILRVEVTE SSLILQPENA ITTMRKLSSL GLTLALDDFG TGFSSLSYLK
KLPLDIIKID RSFVAGIGIN EADEAIVDTT LVLAKRLNMH CIAEGVETVE QFNYLVAKQC
HYLQGYLYSK PSSAEKIMKN LLIDKTELTY SQAL
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