| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4948 |
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| Symbol | |
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| ID | 3522426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 5246956 |
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| End bp | 5249721 |
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| Gene Length | 2766 bp |
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| Protein Length | 921 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637287387 |
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| Product | sensory box protein |
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| Protein accession | YP_271587 |
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| Protein GI | 71281954 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCTA TTAGAGCTAT TGTAAAAGCC AAAAATACTA TTTTGTTTAA GTTTTCTTTT
GGTATGAGTC TGTTGTTTTT AGTGATGACT GCGGCGACCT ATATGGTGGT TGACCTCGTG
GTTAAAAATT ACCTAGTCAA TAAAAACAAA GAGTCGATCG ACGAGATTGG TTCGCACATA
GTCTCAGAGA TATCCCAACG CATTAGTATC GCAGAAACCT TAACCCGACA TTTGGCCGCA
GCAGGGGAAA CTTGGCCTCA AGACCCACAG CTATTCTACA AAGTTATTCC TCAAATGCTG
AATATGAAAG AATACCAAGA CATTATTGCT GGCGGTGGCG TGTGGCCTGA GCCTCAACAG
TTCACCCTTG GTGTAGTGCG ACGGAGCTTC TTTTGGGGTC GAGACAATTT TGGGGAATTG
CAATACTTCG ATCAATATAA TGATGTCGAG GGCACAGGTT ATCATGATGA AGAATGGTAT
GTGCCAGGTC GTTATAGCAA ACAAGGTGAA TGCCTTTGGT CTAAATCTTA TATGGACCCG
TATACATTAG CGCCGATGGT GACTTGTACC GTCGCCATGT TCAAACAAGA AGTATTTTCG
GGCAATGCAA CAGTTGATGT CAGTCTTCAA CAACTCAAGA GTATATTACA CCAAGGTAGT
GCCAAACTCA GAGGATACGC TTATGCTGTA GACCGTAATA ATAAGTTTTT GTCTTTTCCT
GATGATGAGT TAACTAAAGT AGCCAATCGA GATAGTAATC ACTTAACTCA AGAATATATT
ACAGTAAATC AACTGGCTGA AAAGCTTGAG TCCTTCCAAC CTATTGCCGA AATCTTAACT
GAGATAAACC AATCTTTGAT TCAGTCTATA GCAGACAAAA CAAGAGTACC GGCTGCAAAT
ATTACCGAAC AAAGTAAGCA AATATCTCCC TTAGACGCGC AATTAATTGT TGCCAATATG
TCAACTATGC CAGATCAGAG TTCTCATCGT AATACTAAGA CTATTTCAGT GATAAGTAAG
CAAGATTTTC TACTTGGTGA AGCAGTGAAT GTATCGGTAT TTATTATACC AAAAACGTTG
TGGAAGGTTG TTGTGGTCAC CCCGCAAATG GTGGCGATAA ATAGCGCAAG TAAGGTATCA
AACCTGATCT TAATGTTGCT CATCGCAATC ATGATTATTG CGGCTTTTTT GGGTTTTATT
TATTGTCGAC GCAGTTTAAT TATGCCTATT TATCAAATGG TTAATCAGCT GCAACGGCCA
GTTACTGAAG GTGGGCAGGT TTACCCAGAA TTGCTCGATG ACCGCAGACA GGATGAATTT
GGTCTGCTGG CTTACCACTT TAATCAGTCT AAAATGGCGC TAGATAGTAA CAACCGAGAT
CTAAAATTAC AGATCAATGA ACGTAAGCAG GCAGAATATC AATTAAAACA TCTGGCGCTA
CATGATCCGC TGACGGGTTT GCCTAATAGA CTATTATTTC AGGATCGGCT GGAACAGGCG
ATAGCACTGT CTGACCGTCA CCAACATAAA TTTGCCGTAT TTTTTATGGA TCTAGACAAT
TTCAAGATCA TCAATGACAC CATGGGTCAT GACGCTGGTG ATGAATTATT AAAGCAGGTT
TCGTTAAGAC TCTCTTGCAC CGGGCGAAAG ACTGATACGG TAGCGCGCCT AGGGGGTGAT
GAGTTTGCTT TTATTATCAC TAAAGTTAAT ACAATTGAAG ATGCGGTAAC CTTCGCTCAG
CGGCTCAACT CGTTATTGAA AACACCAATA GAAATTAACG GAAACAATAT TAATATGGGT
AGTAGTATTG GAATCACTAT TTATCCTGAC GATGCAGCTA ATAGTGAGGA ATTACTACGC
AATGCCGATA TTGCTATGTA TCAGGCGAAG GATGATGGCA GAAATACAGT CCGCTTTTTT
ACCAGTGAAA TGAATGCAAG ATTGCAAAGA AATAAGGAAG TTTTGACTGA CTTAGCTGAG
TCTTTGACTA AAGAGCATTT TGAACTCTAT TACCAACCGC TCTTTACTAT CGACCAAAAT
ATCTTGGTTG GAGCGGAAGC GCTCATCAGA TGGCATCATC CTGAGAAGGG CATGATTCCT
CCGGATCAAT TTATTGCAGT TGCCGAGAAG AGTGGATTGA TCAATGAATT GGGTGATTGG
GTCTTAGCGC AGGCATGCCG CGAAATAAAA AACTTTTTGA ATGCGGGGAT TACAGTCTTT
AAGGTGGCGA TTAATATTTC TCCTGTGCAA TTTAGGCGTA AAGATCTTTT ACAGCATATG
TTAATGATTC TTGCGCAACA TGATGTTAGC GCAGAGCTTA TCGAACTTGA AATCACAGAG
GGTGCGGTGA TGGATAATGT CGATCAAGCT ATCGAGACAA TGCAAGCCTT GCACGATGCA
GGCTTTCAGT TGGCGATGGA TGATTTTGGT ACCGGTTATT CCTCACTAAG TTATTTGAAG
CGTTTTCCGA TCCAAAAGGT GAAAATAGAT CGTAGTTTTA TTTCAGACCT TGAGAATGAC
GATGATAGTA AATCTATTAC CACCGCTATT ATTCAAATGA GTCACTCGTT AGGATTGCAT
GTACTTGCTG AAGGTGTTGA AACCGAAGAG CAACTGCATT ATCTACAAGC CGAAAAGTGT
GATTATGTGC AAGGTTATTA TACGGGAAGA CCTATACCAG CCAGCGAGTT TATTAAAAAC
TTCAGCGAGT CCAAAAAAGG GAAATATGCT AACGGCGTCT GGACTGAATC AACGACAATG
ACTTAA
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| Protein sequence | MSSIRAIVKA KNTILFKFSF GMSLLFLVMT AATYMVVDLV VKNYLVNKNK ESIDEIGSHI
VSEISQRISI AETLTRHLAA AGETWPQDPQ LFYKVIPQML NMKEYQDIIA GGGVWPEPQQ
FTLGVVRRSF FWGRDNFGEL QYFDQYNDVE GTGYHDEEWY VPGRYSKQGE CLWSKSYMDP
YTLAPMVTCT VAMFKQEVFS GNATVDVSLQ QLKSILHQGS AKLRGYAYAV DRNNKFLSFP
DDELTKVANR DSNHLTQEYI TVNQLAEKLE SFQPIAEILT EINQSLIQSI ADKTRVPAAN
ITEQSKQISP LDAQLIVANM STMPDQSSHR NTKTISVISK QDFLLGEAVN VSVFIIPKTL
WKVVVVTPQM VAINSASKVS NLILMLLIAI MIIAAFLGFI YCRRSLIMPI YQMVNQLQRP
VTEGGQVYPE LLDDRRQDEF GLLAYHFNQS KMALDSNNRD LKLQINERKQ AEYQLKHLAL
HDPLTGLPNR LLFQDRLEQA IALSDRHQHK FAVFFMDLDN FKIINDTMGH DAGDELLKQV
SLRLSCTGRK TDTVARLGGD EFAFIITKVN TIEDAVTFAQ RLNSLLKTPI EINGNNINMG
SSIGITIYPD DAANSEELLR NADIAMYQAK DDGRNTVRFF TSEMNARLQR NKEVLTDLAE
SLTKEHFELY YQPLFTIDQN ILVGAEALIR WHHPEKGMIP PDQFIAVAEK SGLINELGDW
VLAQACREIK NFLNAGITVF KVAINISPVQ FRRKDLLQHM LMILAQHDVS AELIELEITE
GAVMDNVDQA IETMQALHDA GFQLAMDDFG TGYSSLSYLK RFPIQKVKID RSFISDLEND
DDSKSITTAI IQMSHSLGLH VLAEGVETEE QLHYLQAEKC DYVQGYYTGR PIPASEFIKN
FSESKKGKYA NGVWTESTTM T
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