| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4947 |
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| Symbol | nirB |
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| ID | 3519618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 5243944 |
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| End bp | 5246544 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637287386 |
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| Product | nitrite reductase [NAD(P)H], large subunit |
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| Protein accession | YP_271586 |
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| Protein GI | 71277901 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACAG ATAAACAGCT ATTAACTAAA ACTAATATTG TTGTGGTAGG TAACGGCATG
GTTGGCCATC ACTTTGTTGA GGAAATGGCT AAAAATCCAA ACTATCAAAT AACAGTGCTC
TCAGCGGAGT CTCGCTTAGC TTACGATAGA GTTCACTTAT CGGAATATTT TGGTGGTAAA
ACTGCTGACG ATTTAGCAAT GACTACACCG GAACATTATG AAGCCTTAGG GGTGACCTTT
AAAACCAATG CTAAAGTGAT CCTGATTGAT AAAATCGTTC AATATGTGAC GACTGAAAGT
GGCGAAACTT ATCATTATGA TAAATTAATT TTAGCTACCG GCTCGTACCC ATTTGTTCCT
CCCATTCCTG GTAAGGACCA AGATCATTGT TTAGTTTATC GTACTATTGA TGATTTAGAA
GACATCGCCG CTAGCGCTAA AGAAAGCAAA GTCGGCGTGG TTATTGGTGG TGGTTTATTA
GGTCTTGAAG CGGCAAACGC TATCAAGCAA TTAGGTCTAC AAACACACGT TGTTGAATTT
GCCCCACAAT TAATGGGTGT TCAAATTGAT GGTGGTGGCG GTCGTTTATT AAGACAAAAA
ATTGAAGACT TAGGTGTACA AGTTCACACC TCTAAAGCGA CAAGCGTAAT CGAAAAAGGC
AATACTAGCC GCTATAAATT ATGTTTTAGT GACGAGACTG AATTAGAAAC CGATCTAATT
TTATTTTCTG CAGGTATTCG CCCGTATGAC AACCTTGCAC GTGAATTTGA CCTTACTTTA
GGTGAGCGTG GCGGTATTGT TGTTAACAAT CAGTGTCAAA CCTCAGACGA AAATATTTAC
GCCATTGGTG AATGTGCTTT ATGGAATAAC TTTATCTTTG GTTTAGTTGC ACCGGGTTAT
GCTATGGCTA AAGTTGTCGC CAAACACATT GCTGGCTTTA CTAATGAAGG AAATGGTGAA
AACGGAGAAA TTGCTGAGTT TACGGGTGCG GATATGAGTA CTAAGTTAAA ACTCATGGGC
GTAGAAGTTG GCTCAATTGG TGATGCTCAC GGTAAAACTG AAGGTGCATT AACCTACACT
TACGAAAATC AACCTGAAGG TGTTTATAAG AAAATAGTAG TCTCTTCGGA TAAAAAATCC
TTACTAGGTG CTGTGCTTAT TGGTGATACC AGTGAATACG ATACCTTATT GCAATATATG
CTTAATGCCA TTGAATTACC TGAGTCTCCA GAAGGTCTTA TCTTACCAAT GGCTGCTGAT
AAGCCGACAT TAGGTGTTGA TGCCTTACCT GATACGGCAA CCATTTGTTC ATGTCATAAC
GTCACTAAAG GCGACATTAT TGCTTCTATT GATGCAGGCG CGATGACCGT TGGCGATGTT
AAAAGCTGTA CTAAAGCCGG CTCTGGTTGT GGTGGCTGTG CTGCCTTGGT TAAAAGCGTT
GCTGATAACG AATTTGAAAA ACGCGGTGTT GAAGTTAAGA AAGACATTTG TGAGCATTTT
GCTTATTCAC GTCAAGAAAT ATACGACATT GTTAGTGTTG GAAAAATCAA AACCTTCGAC
GAGCTACTTG AAAAACATGG TCGTGGTCTA GGTTGTGAAA TTTGTAAACC GGTAGCTGGC
TCTGTGCTTG CTTCTGTATG GAATGACTAC ATTCTTAAAA AACCTCATTT ATCTCTACAA
GATACTAACG ATACCTACCT TGGTAACATG CAAAAAGATG GTACCTACTC AGTTGTTCCT
CGAATTGCTG GCGGTGAAAT TACCCCTGAC AAACTTATCG TATTAGGTGA AGTAGCTAAA
AAATATAATC TTTATACCAA AATTACCGGT GGCGCACGGG TTGATTTATT CGGCGCACGT
GTTGAGCAAT TACCGCCAAT TTGGAAAGAA TTAGTCGATG CTGGTTTTGA AACAGGTCAT
GCCTACGGTA AATCATTACG TACGGTTAAA TCATGTGTTG GTTCTACTTG GTGTCGTTAC
GGCGTTCAAG ACAGCATGAG CATGGCTATC GACTTAGAGC ACAGATACAA AGGTTTACGT
GCTCCGCATA AGATTAAGTT CGGCGTGTCG GGTTGTACTC GTGAGTGTGC TGAAGCACAA
GGTAAAGATA TCGGCATAAT CGCAACAGAT AATGGTTGGA ACTTATACGT TGCTGGTAAC
GGTGGTATGA AACCTCGCCA CGGTGATTTA TTCGCCACGG ATTTAGATGA TGAAACCTTA
GTTAAATATG TTGACCGTAT CTTGATGTTC TACGTACAAA CGGGCGACAG ATTACAACGT
ACATCAACTT GGATCGACAA CTTAGAGGGC GGTTTAGCTT ACTTACAAGA CGTTATCATC
AATGACAGCT TAGGCCTAAA TGATGCGTTA GAAACACAAA TGAAAGCCAT TGTTGGTACC
TATCAATGTG AATGGAAAAC AACTATTGAA GATCCAGAAG CATTAAAACG TTTCCAACCA
TTTGTTAACT CAGATAAAAG TGATAGTAAC ATCCAATTTG TGACTGAACG CGAACAAATT
CGTCCTGCAC GTGGACAAGA AAAAATTGAT GTTAAATTTA TCGACGCAAC TGAAAAAGAA
GCCGTAGCTG AAGAAGCTTA A
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| Protein sequence | MNTDKQLLTK TNIVVVGNGM VGHHFVEEMA KNPNYQITVL SAESRLAYDR VHLSEYFGGK
TADDLAMTTP EHYEALGVTF KTNAKVILID KIVQYVTTES GETYHYDKLI LATGSYPFVP
PIPGKDQDHC LVYRTIDDLE DIAASAKESK VGVVIGGGLL GLEAANAIKQ LGLQTHVVEF
APQLMGVQID GGGGRLLRQK IEDLGVQVHT SKATSVIEKG NTSRYKLCFS DETELETDLI
LFSAGIRPYD NLAREFDLTL GERGGIVVNN QCQTSDENIY AIGECALWNN FIFGLVAPGY
AMAKVVAKHI AGFTNEGNGE NGEIAEFTGA DMSTKLKLMG VEVGSIGDAH GKTEGALTYT
YENQPEGVYK KIVVSSDKKS LLGAVLIGDT SEYDTLLQYM LNAIELPESP EGLILPMAAD
KPTLGVDALP DTATICSCHN VTKGDIIASI DAGAMTVGDV KSCTKAGSGC GGCAALVKSV
ADNEFEKRGV EVKKDICEHF AYSRQEIYDI VSVGKIKTFD ELLEKHGRGL GCEICKPVAG
SVLASVWNDY ILKKPHLSLQ DTNDTYLGNM QKDGTYSVVP RIAGGEITPD KLIVLGEVAK
KYNLYTKITG GARVDLFGAR VEQLPPIWKE LVDAGFETGH AYGKSLRTVK SCVGSTWCRY
GVQDSMSMAI DLEHRYKGLR APHKIKFGVS GCTRECAEAQ GKDIGIIATD NGWNLYVAGN
GGMKPRHGDL FATDLDDETL VKYVDRILMF YVQTGDRLQR TSTWIDNLEG GLAYLQDVII
NDSLGLNDAL ETQMKAIVGT YQCEWKTTIE DPEALKRFQP FVNSDKSDSN IQFVTEREQI
RPARGQEKID VKFIDATEKE AVAEEA
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