| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4946 |
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| Symbol | nirD |
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| ID | 3521480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 5243572 |
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| End bp | 5243928 |
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| Gene Length | 357 bp |
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| Protein Length | 118 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637287385 |
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| Product | nitrite reductase [NAD(P)H], small subunit |
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| Protein accession | YP_271585 |
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| Protein GI | 71281011 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTACAA CCACGAACAA AGCATGGCGC ACTATTTGTA AGGCAACTGA ACTAGTAAAA
GATTCTGGTA TCAGTGCTTT AATAGCTAAC TCGGCGGGTG AAGATGAGCA AATTGCCATC
TTTCATATAC CTAACAGCGA AGAAAAAATA TATGCCGTAG GTAACTACGA CCCTATTGGT
CAAGCCAATG TCTTATATCG CGGTCTTGTT GGCTGTATTG ATGATGAGCC AGTGGTTTCT
TCGCCATTAT ATAAACAACA TTACTCGTTA AAAACAGGTC GTTGTTTACA AGAAGATCAG
ACTATTGCCG TTTACGATAT ACGGATTGAA AACGAGCAAG TACAACTTTT TTACTAG
|
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| Protein sequence | MTTTTNKAWR TICKATELVK DSGISALIAN SAGEDEQIAI FHIPNSEEKI YAVGNYDPIG
QANVLYRGLV GCIDDEPVVS SPLYKQHYSL KTGRCLQEDQ TIAVYDIRIE NEQVQLFY
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