| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4941 |
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| Symbol | |
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| ID | 3519360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 5234391 |
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| End bp | 5236292 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637287380 |
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| Product | sensory box protein |
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| Protein accession | YP_271580 |
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| Protein GI | 71279119 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTACGCG CAAGAGGTTG GTATGTACTT ACTGCTGATT TACTTTATTG GTTAGTTATT
GGTATGCCGC TTACCGCTTT ACTTATTTGG AGCAACATGG AATTTGCCCA AAGTTTCGTG
TTCTTTAGTG TCTTGAAACA AGCTATCAAT GCAATGCTCT ATACTTCCTT AGCTTGTATT
TTACTGTTCA CTTTTAATGA CTATTTCCAA TCGATAAAAT CAAGTCAGCC GCCATTAGTT
AAAAGTTTAC CCAAATGGCT CTTGTATTCA TTTTGGAGTA TTTCTGCATT TTTTGTTATT
TGTGTTTCAT TGGTACTCAG TACTAACTTT AGTGAATTTC AGAAGGCACA ACTTGAAAAA
GAATTAGAAA TTAATAACAA CTATATTACC CATATTGGTA ATAGTTATTT AAATGAACAT
CAACAAGCGA TTGAAAATAT CGCCTACCAA CTATCTTACA TAACAGACCC AGCAGAAAGA
AAAAGGGCAC TATCAAAATT TCATCATTTA TACCCTGGTT TTTTGACCAT GCTAACCGCT
TCCAAGCAAG GAAAAATAGA GTTAGCCTCA CCTAGTTCAA TTATGGAAAA GTTAGTTATT
GGTCAATTTT CAGTAGTCGA CCGTCCTTAC TTTATCCATG CTATGGAAGA GCAAAAATTA
TTCGTTTCTG ACGTATTTCT AGGTAGAGCT TTTGGTAATG ATCCAATTAT TGCCATCAGT
GCTCCACTCT ATCAAGGTGA TGGGCTAAAT GGCCCTTCAG GTATTGTTGA AGGCTCCTTG
AATTTAGGAA TGTTTGGCCT TTATGACAAA ATAGGCCACG ATGAAAAGCT GATCAAAACG
ATTGTAACGG ATCAAAATGA CCGAATTATC TATTCTTCAG ATAGTTTGCA ACTAGAGACC
TTATCTGGAT TTAGTTATGA AGATCGTGCC TACAAAAACT CACTAAACTT AATCAGCTTA
AAATCAGAAA AAAATGAAGG TGAAATGTTT ATTCACAAGC AAACGCAATT AATGAATGAC
TGGAAAATTC ACTCCTTGAT AGAACATAAG TTTTCTTTGA AAAACATAGA AGACTTGTAC
TTAGTTATGT TTTTAACACT GTTTGTTACT TTACTTGCAG CCAGTTTTTT TGCAAAGAGG
TTCGCTATTC ATTTAAGTCG CCCACTGAGA TTCGTTATGG ATGAATTATC AAAAGGCAAA
AAAACAGGGG ATTTCAGAGA TGTTCCTTAC GAAACGCCAA CCGAAATTCA GAAACTTTAC
CAAGAGTTAA GGGTAAACCG TCTAGCACTG CTGGATAATC AAGAAGAATT ACAAAAACAG
GTATTTAAAA GAACAGAAGA ACTTAACCAA GCAAACCGTA AATTAACTGA ACAAGCCAAT
ACCGACACGT TAACAGGCCT TTATAACCGT CGATATTTTG AAAAGAATTT TAAAATGATG
CAATCCATTT TTTCTCGAAA TAACTCCAAC TTGATGTATG CAATAATTGA TTTAGATTTT
TTCAAAAACA TTAATGATAC CCACGGACAT TTGTTTGGCG ATTATTGTTT AGTTACCGTG
GCAAACATGT TGAAGAAGTT TTTCAATCGC GATTCCGATC TCGTTGCTCG CTTTGGTGGT
GAAGAGTTTG TCGTGGTTTC ACAATGTGAT GATGTTGAAA TACTGAGGTC ACGGATGGAT
GAATTTCTGC AACAAATCGC TGCCTATGCA TTTAAAGATG ATGGTAAGGG GCCTATCACA
TTAACCATTT CAGTTGGCAT CGCGGTAGGA CAAGCGAAAT ATTCTAATCT AGGGGAAGAT
TGGTTTGCCG TTGCTGATGA GTGCCTTTAC GAGGCTAAAG ATAATGGTCG AAATCAAACA
AAAATAACCG TGATAGATAT TTCAGCTAAA GTAAATGTTT AA
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| Protein sequence | MLRARGWYVL TADLLYWLVI GMPLTALLIW SNMEFAQSFV FFSVLKQAIN AMLYTSLACI
LLFTFNDYFQ SIKSSQPPLV KSLPKWLLYS FWSISAFFVI CVSLVLSTNF SEFQKAQLEK
ELEINNNYIT HIGNSYLNEH QQAIENIAYQ LSYITDPAER KRALSKFHHL YPGFLTMLTA
SKQGKIELAS PSSIMEKLVI GQFSVVDRPY FIHAMEEQKL FVSDVFLGRA FGNDPIIAIS
APLYQGDGLN GPSGIVEGSL NLGMFGLYDK IGHDEKLIKT IVTDQNDRII YSSDSLQLET
LSGFSYEDRA YKNSLNLISL KSEKNEGEMF IHKQTQLMND WKIHSLIEHK FSLKNIEDLY
LVMFLTLFVT LLAASFFAKR FAIHLSRPLR FVMDELSKGK KTGDFRDVPY ETPTEIQKLY
QELRVNRLAL LDNQEELQKQ VFKRTEELNQ ANRKLTEQAN TDTLTGLYNR RYFEKNFKMM
QSIFSRNNSN LMYAIIDLDF FKNINDTHGH LFGDYCLVTV ANMLKKFFNR DSDLVARFGG
EEFVVVSQCD DVEILRSRMD EFLQQIAAYA FKDDGKGPIT LTISVGIAVG QAKYSNLGED
WFAVADECLY EAKDNGRNQT KITVIDISAK VNV
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