| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4928 |
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| Symbol | |
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| ID | 3521824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 5219038 |
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| End bp | 5221644 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637287367 |
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| Product | sensory box protein |
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| Protein accession | YP_271567 |
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| Protein GI | 71281352 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATT ATGCAAGCCT ATTAATGTCT TTAACCAGTG GTTCAGCGCT AGATTCTGGA
TGTATGGAGC AGTTAATACA AGAAGGGCTT TATGTTACCC CTGCTTTATT TTCTGTCGAC
CGTGCAGCAC TGTGGGTATT AGATAAAGAC GAACAAGCTT ACCTTTGTGA AGCTGATTTT
TTTGATGGCA TGATTGATCA TAGATCATCT CAACGATTAA CTAAAAAAGA AGATGCAGAG
CTTTTCTCTT TTTTAGAAAG TACCTCTGAA ATAATTATTA ATAATTATTT CACCTATGAA
TCATTTGGTT TAAATACCAG CAGAATATTA TCACGGTTTC AGCTCTGTTC ACTTCTGCTT
ATTCCCTTAC AAATCAAAGG CGAAAATAGA GGTTTTATAT TTCTAGGTGA TAGTCAAAAA
AATATCGAAT GGTCTCCCGA TGTGCTTTTT GCCAGTAGAA TTTTAGTGCA GTTATTTGAA
CGAGCGCTGT TAGCACTAGA TAATTCAGTC GCTGAAACTA AGCTCCAACA TCAATATCAG
TTGATGAGTG AAATAGAGAA GCTTGCCAAA ATTGGTGGCT GGGACTACGA AATATCAACA
GGAAAAACAC ATTGGACAGA AGAAACATAT CGGATTTATG GCTTATCACT TGATGAAGAA
ATAACGCTAG AACAGGCCGC TAAATTTTAC AGTCCAGAAG TTCAAAAAAC GATAAAAGAT
GTCTTTGAAT TAGCTGTAAA TCAGTTGATA CCTTATCAGG TAGAGTTGCC ATTTATTGAT
GCTCAAGGCA ACCATAAATG GGTAAAGACT ACGGGGCAAA TAAGAAGTAA TGCTCAAGGC
ATTGCAACCC ATGTTTATGG CGCATTCGAA GACATAACCG AACAAAAACA ACTTCTCGAC
TCAGAAAGAT CGACCAGTGA AGACTTAAAA ACAATTGTTG ATAATTTAAA CGATAGTATT
GTCACTATTT CAAGTAAAGG CATTATTTTA TCCGCCAATA GGATGGTAGA AAAAACATTT
GGCTATTTAC AGCAAGAGTT GATTGGCCAA AACGTTTCAA TATTAATGCC AAAGCCCTTT
GTTTCTCAGC ATGATAAGTA TATGCAGAAC TATCTCAAAA CAGGTCATGC TAAAATCATT
GGAGTTGGAC GAGAGCTTCC TGCGATGAAA AAAGATGGCA CTAGTTTTCC GATGGAATTA
TCGATATCAG AAGTATTGCA CGGAAATGAT AAAGTTTTTA TTGGCATCGT TCGAGACATC
ACAGAGAGAA AAAAAGCAGA AAAAGATATT CATCAACTTG CTTATTTTGA TGAAACTACC
GGGGTAATGA ATCGTTACTC GCTTGAGCGT GATTTAAAAA AATGTTTCGA TAAATCCTTA
CTCTTAAATG AAAATATCAC AGCAATGCTT ATAAATTTAG ATAAGTTTTC TCAAGTTAAC
TTAATTTATG GTGATGATAC TGGCGACGTC ATTTTAAAAG AAACCGCGAC CAGACTAAAT
GAACGTTTAC CTTCTTGGGT AGTTACTTAT AGAAGCAGTG CAGATAGTTT TTATGTGCTT
ATCAATCCAA GTGCAGCGGT TGGGTTAGAT GACGCACGTA TCATGACCAA TGAAGACTTA
GCCGAGAAAA TTCTTAAAGA GATTCATCAA GCAATTACCA TTAATCAGCA TGTAATTAAT
GTGCAAGCAA GTATAGGAAT ATTAAATATT CCTGCTAAAG ATATAGACTA CATTGATATC
AAGCCATTAC TAGAATTAGC TGTCTTTAAT GCTAAAAATA AGGGTGGTGA TAATTATGTT
TTTGCTAGCA ATAATGATAC CTGCTCACTT AAAAGGCATT CAGAATTATC ATTAGCGATG
AAAAGTAACC TGTTCATCCG TGAACTCAAT ATTGTGTTAC AGCCTCAATA TTCCACACAA
GGTAAAATTG TTGGTTCAGA GGCATTGGTA CGTTGGCAGT CTGCATCACT AGGAGGAATA
TCACCCGTTG AATTTATCCC CTTAGCAGAA AAGAACGGCG CTATTATTGA ATTGGGTAAT
TGGATTATCG ATAAAACTTG TAGTTTGTTA GCGCAAAGGC GAGTGTTTTC AAAAGAAACA
TCCCCTATAT CTGTCAATAT AAGTGCCAAA CAAATTGCTC AGCCAAACTT TGTCGATAAC
CTTTTAACTA GCCTTGATAA TTACCAAGTC CCCTACTCAG AGCTGGTACT GGAATTAACC
GAAAGTGCAC TGGTTACCGA CTTAAAACTT GTGGTCAGTA AAATGGAACT ATTGAAAAGC
AAAGGTATTC TCTGCTCAAT TGATGATTTT GGTACCGGTT ATTCAAGCTT AAATTATATT
CATCACCTAC CAATAATCGA ACTAAAAATT GATAAGTGTT TTGTTGATGA TATAAAAAAT
GAAACAGATG ATGTGCCGAT CATCAATACC ATATTACAGA TGGCAAAGTC TTTAAAACTC
AGGGTGGTCG CTGAAGGTGT TGAGTCTAAA GCACAACTAA ATTATTTAGC TGACCATGGT
TGCGATGTTA TACAAGGCTA TTACTTTTCT AAGCCGTTAA ATTCTACCCA GTGGTTAGAT
AAATGGAAAG AAAAGTTAAG TGATTAA
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| Protein sequence | MTDYASLLMS LTSGSALDSG CMEQLIQEGL YVTPALFSVD RAALWVLDKD EQAYLCEADF
FDGMIDHRSS QRLTKKEDAE LFSFLESTSE IIINNYFTYE SFGLNTSRIL SRFQLCSLLL
IPLQIKGENR GFIFLGDSQK NIEWSPDVLF ASRILVQLFE RALLALDNSV AETKLQHQYQ
LMSEIEKLAK IGGWDYEIST GKTHWTEETY RIYGLSLDEE ITLEQAAKFY SPEVQKTIKD
VFELAVNQLI PYQVELPFID AQGNHKWVKT TGQIRSNAQG IATHVYGAFE DITEQKQLLD
SERSTSEDLK TIVDNLNDSI VTISSKGIIL SANRMVEKTF GYLQQELIGQ NVSILMPKPF
VSQHDKYMQN YLKTGHAKII GVGRELPAMK KDGTSFPMEL SISEVLHGND KVFIGIVRDI
TERKKAEKDI HQLAYFDETT GVMNRYSLER DLKKCFDKSL LLNENITAML INLDKFSQVN
LIYGDDTGDV ILKETATRLN ERLPSWVVTY RSSADSFYVL INPSAAVGLD DARIMTNEDL
AEKILKEIHQ AITINQHVIN VQASIGILNI PAKDIDYIDI KPLLELAVFN AKNKGGDNYV
FASNNDTCSL KRHSELSLAM KSNLFIRELN IVLQPQYSTQ GKIVGSEALV RWQSASLGGI
SPVEFIPLAE KNGAIIELGN WIIDKTCSLL AQRRVFSKET SPISVNISAK QIAQPNFVDN
LLTSLDNYQV PYSELVLELT ESALVTDLKL VVSKMELLKS KGILCSIDDF GTGYSSLNYI
HHLPIIELKI DKCFVDDIKN ETDDVPIINT ILQMAKSLKL RVVAEGVESK AQLNYLADHG
CDVIQGYYFS KPLNSTQWLD KWKEKLSD
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