Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4916 |
Symbol | |
ID | 3522588 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 5206279 |
End bp | 5207319 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637287355 |
Product | putative C4-dicarboxylate-binding periplasmic protein DctP |
Protein accession | YP_271555 |
Protein GI | 71282115 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAT TACTAGCAGC TTTATTAACA CTAAGTCTTA GCTTAGGTGT GAGTGCTGAA ACTTGGAAGT TCGCCTCTGA AGAAGATAAA CAAGATGTAC AAGACATTTT CGCGAAAACG TTCGCGAAAA CCATCAAAAA AGAATCCGAC GGTGATATTC GAGTAAAAGT TTATTATTAC GGTCAATTAG GTACAGAGAA CGACATTGTT GAGCTGACAG CTAAAGGAAC CATTCAGTTT GTCTCAGTAG GGACTGGTCA TTTAGGCTCT TATGTACCTG AAGTTCAAGC ACTGAGTATA CCGTATGTTT TAGGCACTGA TACTGATGTT GTGCGTAAAG TACTGACCAC CAGTAAAACT ATCTATGGTG ACTTGGCTAA TCGTTTCGAA AAAGTAAATT TGAAGTTATT GACCATGATG TCCGAAGGTG AAATGGTTTG GGGTGCCAAC AAAGCGATCC GCAGTCCTGA AGATTTTGCA GGCCATAAAA TCCGTACATT TACTTCGACT ATTCCGGTAG AAACCTACAA AGCATTTGGT GCTACCCCTA CTCCATTGTC TTGGGGTGAA GTATATGGTG CGCTACAACT TAAAACAGTG GATGGCATGG TTAACCCCAT TTACTTTGTT TACAACGCTA AGTGGCATGA AGTTCAAGAT TATTTGATGT TTCCTGGCCA ACAGCCATAC GTCAGCACGG TCTCTACCAA TAGCACATGG TTCAATGGGC TATCGCCTGA GAAAAAAACC ATGGTACGCA AGGCTATCGT TGTTGCCGAA CAAGCTGCTC ACGAGTATCA AATCCGTATA AACCAAGAAA ATCTGGACAA AATAATCGCT GAGCGTCCCG ACTTGAAGAT TATTGTTCTC AATGAAGAAG AACGTACGCG CTTCAAAAAG TTAAGTAAGT CAATTAATAA AACATTCTAT GATGTGGTCG AAAATACTTA TCAAGAGTCA GAAAAAGCGC AAGCTCGTGT TAGTGCTAAA AAAATCGTGA AAAATTTGAT CAAAGAAGTT AAGGAAGCGA CAAAACAGTA A
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Protein sequence | MNKLLAALLT LSLSLGVSAE TWKFASEEDK QDVQDIFAKT FAKTIKKESD GDIRVKVYYY GQLGTENDIV ELTAKGTIQF VSVGTGHLGS YVPEVQALSI PYVLGTDTDV VRKVLTTSKT IYGDLANRFE KVNLKLLTMM SEGEMVWGAN KAIRSPEDFA GHKIRTFTST IPVETYKAFG ATPTPLSWGE VYGALQLKTV DGMVNPIYFV YNAKWHEVQD YLMFPGQQPY VSTVSTNSTW FNGLSPEKKT MVRKAIVVAE QAAHEYQIRI NQENLDKIIA ERPDLKIIVL NEEERTRFKK LSKSINKTFY DVVENTYQES EKAQARVSAK KIVKNLIKEV KEATKQ
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