Gene CPS_4846 details

Gene Information

• Locus tag: CPS_4846
• Symbol: ilvD
• ID: 3522734
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 5137617
• End bp: 5139479
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637287285
• Product: dihydroxy-acid dehydratase
• Protein accession: YP_271485
• Protein GI: 71282261
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0807241
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTAAAT TAAGATCTGC AACTTCTACT CAAGGCCGTA ACATGGCCGG TGCCCGTGCT 
TTATGGCGTG CTACAGGCAT GACAGATGGC GATTTTGGGA AACCTATTAT CGCGGTAGTG 
AACTCTTTCA CTCAATTTGT ACCCGGTCAT GTGCATTTGA AAGACATGGG ACAATTAGTT 
GCTGGTGCCA TTGAAGAAGC AGGCGGTGTT GCTAAAGAAT TCAACACTAT CGCTGTAGAT 
GACGGTATCG CTATGGGTCA TTCAGGTATG CTTTATAGCT TACCTTCACG TGATTTAATT 
GCCGACTCAG TTGAGTATAT GGTAAATGCT CATTGTGCTG ATGCCATGGT TTGTATCTCA 
AACTGTGACA AAATCACCCC AGGTATGATG ATGGCAGCAA TGCGCTTAAA CATCCCAGTA 
ATTTTTGTAT CTGGTGGTCC AATGGAAGCC GGTAAAACAA AATTGAGTGA TCAAATTATT 
AAGCTTGATT TAGTTGATGC CATGATTAAA GGTGCGGATC CAACAGTAAG TGATGAAGAC 
AGTGATAAAA TTGAACGCTC TGCCTGTCCG ACGTGTGGTT CATGTTCAGG TATGTTCACC 
GCCAACTCCA TGAACTGTTT AGCAGAAGCA TTAGGTTTAG CTCTTCCGGG TAATGGTTCA 
ATGTTGGCAA CACATGCTGA TAGAGAGCAA TTATTCTTAA AAGCGGGTAA ACAAATTGTT 
GAATTAACGA AACGTTATTA CCAAGATAAC GATGAATCAG CTCTACCACG TAATATTGCT 
TGTAAAGAGG CATTACACAA TGCCATGTGT TTAGATATTG CGATGGGTGG TTCAACCAAC 
ACTATCTTGC ATTTATTGGC AACAGCACAA GAAGCTGAAA TTGATTACAC CATGGAAGAC 
ATGGATAAAT TATCACGCAT CGTGCCACAG TTATGTAAAG TTGCGCCATC AACACCTGAG 
TATCATATGG AAGATGTGCA TCGCGCCGGT GGTGTGATTT CAATTCTTGG TGAATTATCG 
CGTGCTGGTT TATTAAAGAC TGACGTACCT AATGTTTTAG GTACTACGTT AGCTGATGTA 
ATTGCCAAAT ATGACATTAC CCTTACTGAC GATGAAGACA TTAAAAAATT CTACCGTGCT 
GGCCCTGCAG GTATTCGCAC TACTAAAGCC TTTAGTCAAG ATTGTCGCTG GGATACCTTA 
GACGATGACC GAGTAAATGG TTGTATTCGT AACCTTGAAA ATGCCTTTTC GTTAGAAGGT 
GGTTTAGCGG TACTTTCAGG TAATATTGCA GTAGATGGCT GTGTTGTTAA AACTGCAGGT 
GTAAGTGACG ACAACTTAGT ATTTACAGGT CCTGCACACA TTTTTGAAAG CCAAGATGAT 
GCCGTAGCCG GTGTTTTAGA CGGAAAAGTA GTCGCTGGTG AAGTGGTTGT TATTCGTTAT 
GAAGGCCCTA AAGGCGGCCC AGGTATGCAA GAAATGCTTT ATCCAACCAC TTACTTAAAG 
TCGATGGGAT TAGGTAAAGC CTGTGCCTTA TTAACTGATG GTCGCTTCTC TGGTGGTACT 
TCTGGTTTAT CCATTGGTCA TGTTTCTCCT GAAGCAGCTG ACGGCGGCAC AATCGCCTTA 
GTTGAACAAG GTGATATCAT TCATATTGAT ATTCCTACCC GTGAAATTAC CCTACAAGTA 
TCTGAAGAAG TACTTGAAGA ACGTCGTGCT GCAATGATTT CTAAAGGTAA GCAAGCTTGG 
AAACCAGCAG ATCGTGTTCG TCCAATTAGC TACGCACTTA AAAACTACGC AATGTTAGCC 
ACTAGTGCTG ATAAAGGTGC TGTGCGTAAC AGAGACTTAT TAGATGGTTT AGTTGATAAG 
TAA 

 

Protein sequence

MPKLRSATST QGRNMAGARA LWRATGMTDG DFGKPIIAVV NSFTQFVPGH VHLKDMGQLV 
AGAIEEAGGV AKEFNTIAVD DGIAMGHSGM LYSLPSRDLI ADSVEYMVNA HCADAMVCIS 
NCDKITPGMM MAAMRLNIPV IFVSGGPMEA GKTKLSDQII KLDLVDAMIK GADPTVSDED 
SDKIERSACP TCGSCSGMFT ANSMNCLAEA LGLALPGNGS MLATHADREQ LFLKAGKQIV 
ELTKRYYQDN DESALPRNIA CKEALHNAMC LDIAMGGSTN TILHLLATAQ EAEIDYTMED 
MDKLSRIVPQ LCKVAPSTPE YHMEDVHRAG GVISILGELS RAGLLKTDVP NVLGTTLADV 
IAKYDITLTD DEDIKKFYRA GPAGIRTTKA FSQDCRWDTL DDDRVNGCIR NLENAFSLEG 
GLAVLSGNIA VDGCVVKTAG VSDDNLVFTG PAHIFESQDD AVAGVLDGKV VAGEVVVIRY 
EGPKGGPGMQ EMLYPTTYLK SMGLGKACAL LTDGRFSGGT SGLSIGHVSP EAADGGTIAL 
VEQGDIIHID IPTREITLQV SEEVLEERRA AMISKGKQAW KPADRVRPIS YALKNYAMLA 
TSADKGAVRN RDLLDGLVDK