| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4829 |
|---|
| Symbol | |
|---|
| ID | 3521706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 5120116 |
|---|
| End bp | 5121369 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637287268 |
|---|
| Product | mechanosensitive ion channel |
|---|
| Protein accession | YP_271468 |
|---|
| Protein GI | 71281235 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAC TGATCAGTAT TTGGTTGAGT GAGCAAGGTA TCAGCTCGAA ATATTTAGCC
AGTAGCGCAA CTGCTGTCGG TATTGGTATG ATTTTGTTGA TTTCTAGCCT AAGTTATTAT
ATTGCGAAAC ATCAAGTCTT AGGTTTGATG AATAAGATCA TTATTAATAG TAAAAATACC
TGGGATGATG CATTGATGGA GCATGGCGTG CTCAGTCGAA TGGCTTTACT ACTACCGCTA
GTATTAATGC TCTTCTTAAC GCCACTTATC TTAGAAACCA CCAGTATTGC CAGTACTTTA
CTCATTTTAT TGAGTAAAGT GTTACTTACT TTTCAAATTT CACGTTGTAT TAGCGCCTTA
CTTAATGTCA GTCGAAGCAT CTATAAAGAA AGTGCCAAGC AACGGTTTTT ACCGTTAAGC
GCTATTATTC AAATCATTAA ATTAGCTTTA TATTTAGTGA CCAGTATTAT CATTATTTCG
CTTATCATTG ACCGCTCACC GGTTTATCTA TTAAGTGGTT TAGGTGCTTT GACCGCGGTA
CTCTTGTTAG TTTTTCAAGA CACCATTAAA GGTTTGGTTG CTAGTATTCA AATATCAGCG
AATAGAATGG TTGTTGCTGG CGACTGGGTT GAGTTACCCA AATATGGTGC CGATGGCGAT
GTGCTAGAAA TAGGTCTAAG TACGGTGAAA ATAGAAAATT TTGATAAAAC CATTACCACA
GTACCTACTT ACGCGCTGAT TAGTGATTCC TTTAAAAACT GGCGCAATAT GTATCATACC
GGCGCACGAC GGATTAAGCG TACCATTATT ATTGATATTG CTAGTATTGA TTTCTGTAGT
GCTGAAAAAA TAAACCAACT GACTAATGCG TATTTATTAC AAGATTACCT TAGTGATAAA
AAGCAAGAGC TGGCACAGAG CGAACACGGC CACAACAGCG GTGAGATCAC CCAATCGTTT
ACTTCTTTAA ATAGTCGACA ACTGACTAAC ATAGGAACTT TTCGAGCTTA TATTACCAAG
TACTTACAAC AAAATAGTCA TATTCGTAAT GATCTTACGT GTATGGTGAG GCAGTTAACC
GCCACGCAAA CTGGCTTGCC ATTGGAAATT TACTGTTTTG CTAACACCAC TGATTGGCTT
GCTTACGAGA CAATCCAAGC TGATATCTTT GATCACCTTT TTGCCATAGC ACCACAGTTT
GATTTGCGTG TTTTTCAACA TCCTAGTGGA CATGACTGGC AACAGAATTC ATAA
|
|---|
| Protein sequence | MNELISIWLS EQGISSKYLA SSATAVGIGM ILLISSLSYY IAKHQVLGLM NKIIINSKNT
WDDALMEHGV LSRMALLLPL VLMLFLTPLI LETTSIASTL LILLSKVLLT FQISRCISAL
LNVSRSIYKE SAKQRFLPLS AIIQIIKLAL YLVTSIIIIS LIIDRSPVYL LSGLGALTAV
LLLVFQDTIK GLVASIQISA NRMVVAGDWV ELPKYGADGD VLEIGLSTVK IENFDKTITT
VPTYALISDS FKNWRNMYHT GARRIKRTII IDIASIDFCS AEKINQLTNA YLLQDYLSDK
KQELAQSEHG HNSGEITQSF TSLNSRQLTN IGTFRAYITK YLQQNSHIRN DLTCMVRQLT
ATQTGLPLEI YCFANTTDWL AYETIQADIF DHLFAIAPQF DLRVFQHPSG HDWQQNS
|
|---|
| |