Gene CPS_4792 details

Gene Information

• Locus tag: CPS_4792
• Symbol: topB
• ID: 3522462
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 5077284
• End bp: 5079233
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637287231
• Product: DNA topoisomerase III
• Protein accession: YP_271431
• Protein GI: 71281990
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAAACTCT ATATTGCCGA AAAACCGAGT TTAGGTCGCG CTATTGCTGC CGCATTACCT 
AAGCCACAAA AAAACCATAA AACACATATT GAGCTCGCTA ACGGTGATGT GGTCAGTTGG 
TGTATCGGAC ACATTTTGGC GCAAGCAGAT CCTGAAGACT ATGATGCCGA ATTAAAAAAA 
TGGCGCATGG AAAGTTTGCC TATAGTGCCG CAGCAATGGC AATTAAAACC CATTGCTCGA 
ACTCGCTCAC AACTCACTGT CTTAAGAAAA TTGGTGAAAC AAGCCGATGA AATTATTCAC 
GCAGGCGATC CCGACAGAGA AGGTCAATTA CTCGTTGATG AAGTGATTGA TTACTTTAAA 
TTATCCAAAA CAAAAAAAGC TAACATTAAA CGTCTGCTGA TCAGCGATTT AAACTTACCT 
GCCGTTAAGC GAGCCCTTAC GTCACTAAAA CCTAATAGTG ATTTTATGCC GTTATCTATT 
TCTGCTTTAG CACGTTCACG CGCTGATTGG CTTTATGGTA TTAACCTTAC CCGTGCATAT 
ACATTGCAAG GGCAAAAAAC CGGTTACAAC TCGGTATTGT CCGTAGGTCG TGTGCAAACA 
CCTTTGTTAG GTTTAGTGGT TAGACGTGAG CAAGAAATTT CAGAATTTGT CAGTAAACCA 
TTCTTCCAAG TTCAGGCTCA TATTGCACTA AGTTCAAAGG ACGCCGTCGC TTTTACAGCA 
AAATGGCAAC CAAGTGAAAA CTGTCAACCA TATTGCGATG AAGAAGGTCG AGTTTTGGTA 
AAAGCATTAG CAGAGAATGT CGTTAAACGC ATTGCTAACC AACCCGCAAC AATCAGTAAT 
ATTGACAGTA ACGAAAAACA ACAAGCCGCC CCATTACCCT TTAATTTATC GCAATTACAA 
ATTAGTGCTG CTAAGCAGTT TTCTATGAAT GCCAAGCTTG TGCTTGATGT TTGTCAGGCT 
TTATATGAAA GACATAAACT GATTACTTAC CCACGTTCAG ATTGTCGGTA TTTGCCTAAA 
GAGCAACTAA AGCAAGCAAG TGGCATTGTT AATACACTCG CCAACTCATC ATTACCTTGT 
AATAAACCCG CTCAAGGGGC AAATACTTCT TTTGTGAGTA AAGCATGGAA CGATAAAAAA 
ATAACCGCCC ATCATGCAAT TATCCCTACC GAGAAATCAC CTGAGAACAT CAATTTAAAT 
ACCTTTGAAA AAAATGTCTA TTTACTGATT GTACGTCAAT ATTTAGTACA GTTTTATCCT 
GCCTATATTT TTCAGCAAAC CAAAGTGGAA TTATTAATTG CTGGCGGGAA TTTTATGAGC 
CAAGCAAAAA CAGAAAAACA ACTGGGCTGG CAAGTCTTAT TCCCAAAAAG TAATAAAACG 
AATAACCAAA GCAAGTTAGA ACATGGGCAA GAACAAGAGC AAACATTGCC CCCTTTAACA 
AAAGGGCAAC TATTACATTG CCAACAAGGC GAATTAATAG AAAAACACAC GTCACCGCCG 
CAATCTTTTA CTGATGCAAC GCTGCTCGGT GCCATGACCG GTATTTCCCG TTACGTCAAT 
GATGCGGCCA TTAAAAAAGT ACTGAAAGAA ACCGATGGTC TGGGTACAGA CGCTACTCGC 
GCCGGCATTA TAGATTTACT TTTTAAACGC GGGTTTTTAC AACGTCAAGG CAAAGCGATT 
ACTGCAACGA AGGTTGGTGT TGCGTTAATC ACCGCCCTGC CCACCATGGC TACTTTGCCA 
GATATGACAG CACAATGGGA AGCAACACTC ACAGCAATCA GTGAGAAAAA TGCCAACTAT 
CTAAGCTTTA TGCAACCTTT AACAGTTATA GTCAATGAGA TGGTACAAGG TGCCAGTCAG 
CAATCTTTTT CTGGTTTACC TAAGGTTGCT TTTAAGCCTA AACGCGGCAA ACGAACATTT 
CAGAAGAAAG CGGTAAAAAA AGCAAGTTAG 

 

Protein sequence

MKLYIAEKPS LGRAIAAALP KPQKNHKTHI ELANGDVVSW CIGHILAQAD PEDYDAELKK 
WRMESLPIVP QQWQLKPIAR TRSQLTVLRK LVKQADEIIH AGDPDREGQL LVDEVIDYFK 
LSKTKKANIK RLLISDLNLP AVKRALTSLK PNSDFMPLSI SALARSRADW LYGINLTRAY 
TLQGQKTGYN SVLSVGRVQT PLLGLVVRRE QEISEFVSKP FFQVQAHIAL SSKDAVAFTA 
KWQPSENCQP YCDEEGRVLV KALAENVVKR IANQPATISN IDSNEKQQAA PLPFNLSQLQ 
ISAAKQFSMN AKLVLDVCQA LYERHKLITY PRSDCRYLPK EQLKQASGIV NTLANSSLPC 
NKPAQGANTS FVSKAWNDKK ITAHHAIIPT EKSPENINLN TFEKNVYLLI VRQYLVQFYP 
AYIFQQTKVE LLIAGGNFMS QAKTEKQLGW QVLFPKSNKT NNQSKLEHGQ EQEQTLPPLT 
KGQLLHCQQG ELIEKHTSPP QSFTDATLLG AMTGISRYVN DAAIKKVLKE TDGLGTDATR 
AGIIDLLFKR GFLQRQGKAI TATKVGVALI TALPTMATLP DMTAQWEATL TAISEKNANY 
LSFMQPLTVI VNEMVQGASQ QSFSGLPKVA FKPKRGKRTF QKKAVKKAS