| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4787 |
|---|
| Symbol | |
|---|
| ID | 3520541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 5068376 |
|---|
| End bp | 5069254 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637287226 |
|---|
| Product | sensory box putative digualylate cyclase |
|---|
| Protein accession | YP_271426 |
|---|
| Protein GI | 71280078 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.243221 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTATT TAGACAATAA CCTACTACTT AACTCCGTCA TTGATCTCAT TGATGATTTG
ATTTTTTATA AAGATAAACA CTTCAGATAT ATTGGCTGTA ATACTGCTTT CCTCAACTTT
GTCGGCAAAA AAGCTGAGGA CCTTATAGGC AAGGATGATT TTGAAATATT TGATCATGAC
TTGGCTTGCC TATTCAGAAA GCACGACAAA CTCATGCTAG CTGAAGGTAG TGTCAGATCC
AATGAAGAAT GGGTTGTCTA TCCTAATAAC AACAAAGTTT ATCTGTTAAC CAAAAAAATT
CCTTTTGTTT ATGATGGTAT TAACACCGGA ATTTTAGGCA TTAGTCGTGA TATCACTTCG
TTAGAGAAAG CCAACCAACA ATTAAAGCAA CAAACATTAT TGGATGAACT TACACAGATA
AAAAACAGAA AAGCATATAA CCTTAAAATT AAATCTTTAC TCGCTGTTTT TGAGCGTTAC
CAAACCCCTT TCTCAATTAT CAGCATAGAT ATTGATGATT TTAAAAATAT TAATGACAAC
TTTGGTCATG ATGTTGGCGA TACGGTATTA CGGAGTTTTG GTGCGCTTAT CGAGAAAAAT
ATTCGAGAAA CTGACCATCT ATTTAGAATT GGCGGTGAAG AATTTGTCAT TTTATCAGAG
TCAAAAACTA AAGTTGATGC GATTCAGTTA GCCGAAAAAT TAAGAAAAAT TGTGGCTTTT
AATACTATTC TTACCGATAT TAATATCACC ATCAGTTTAG GTATTTGTGA AGTAACTACT
GGTGATGGTC CCAACTCTAT AGCTAAGCGA GTTGATAATT TACTTTATGA AGCGAAGTCC
CATGGAAAAA ATAAAGTGAC TTATCATTCA GTAACATAA
|
|---|
| Protein sequence | MKYLDNNLLL NSVIDLIDDL IFYKDKHFRY IGCNTAFLNF VGKKAEDLIG KDDFEIFDHD
LACLFRKHDK LMLAEGSVRS NEEWVVYPNN NKVYLLTKKI PFVYDGINTG ILGISRDITS
LEKANQQLKQ QTLLDELTQI KNRKAYNLKI KSLLAVFERY QTPFSIISID IDDFKNINDN
FGHDVGDTVL RSFGALIEKN IRETDHLFRI GGEEFVILSE SKTKVDAIQL AEKLRKIVAF
NTILTDINIT ISLGICEVTT GDGPNSIAKR VDNLLYEAKS HGKNKVTYHS VT
|
|---|
| |