| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4774 |
|---|
| Symbol | |
|---|
| ID | 3522623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 5058591 |
|---|
| End bp | 5059694 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637287213 |
|---|
| Product | ompA family protein |
|---|
| Protein accession | YP_271418 |
|---|
| Protein GI | 71282150 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.220216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTACT TACCAGTTTC AAAAATAAGC CAGTTTATCG GTTTATCAAT TTTTTCTTTA
TCGTTATCAG CTGCTGAGCA GCCAAGTGCT GAGAGTTTAG TTGGCAAGGT GTATCTTGGT
GGCCATACTT TGTATTTAAA AACAGATGAG GATCGTCTTT TTAATAGCAA TGCCAACTCA
TCAATTGATC ATGCTTCAGG TGTAGGTGCG GAGGCGGGTT ACCGTATCTC AGAGTTATTT
GAAACTAGAC TTTCTTATAC TCATTTTAAT CCGGTTGCTG AAAATCATAA CGTTGATTTA
TCATCAGGCA AAAGTATTGC GTTAGATCTA TTATATTTCC CATTTAAAGA AAGTTTTTAT
GTTGTGGGTG GCGCAGATGT TTTAGATGTT GAGGAATCAA ATCTTTCTGC AGCATTAGGT
GCTGGCTACC GTCATTATTT AAGTAAGAAT ATGGCACTTT ATTTTGAAGG AAAAGGCCAT
TATCAATTTG AAGATAATTA CACTGACCTA TCTGCTAAGT TAGGCTTTAT CTATTTCTTT
GGTACACAAA AAGCTGAAAT AAAGCGTAGT GAGCCAGTAA AAACTAAAGC TGCCGTTGTT
GCCCCTATCG CTGCTGTTGC TCCTATCGCT GAATTAGATA GTGATAATGA TGGTGTATTA
GATAGCAAAG ATAATTGCGC TAATACTCCT GCAACGGACA AAGTAAATGA AGTAGGCTGT
ACTGTTTTTA CTGAAGCGCA AGATACCGTT GAGTTACTTA TTAACTTTGA TAGCAATAAA
GCCGTAGTTA AAGAAAAATA TAAACCAATT ATGGTTAAAG TCGCTAAATT TATGGAAGCT
TATCCAGATC TTAGTTTAAC AATTAAAGGG CATAGTTCAG CAAAGGGAAG TGCTGCATAT
AACCAGACTT TATCTGCTAA GCGTGCTCAG GCTGTTGTTG ATGTTTTAAT TAATGACTTT
GGTGTTGATG CAAGTCGTTT AAATTCGATA GGTTATGGTG AAAGCGAATT ACTAAATACA
GATAATACAG CTGCAGCTCA CGAACAAAAC CGTCGTATAG AAGCTACCAT TTCTACTACT
AATAAAGTAG CGGAAAAACG CTGA
|
|---|
| Protein sequence | MRYLPVSKIS QFIGLSIFSL SLSAAEQPSA ESLVGKVYLG GHTLYLKTDE DRLFNSNANS
SIDHASGVGA EAGYRISELF ETRLSYTHFN PVAENHNVDL SSGKSIALDL LYFPFKESFY
VVGGADVLDV EESNLSAALG AGYRHYLSKN MALYFEGKGH YQFEDNYTDL SAKLGFIYFF
GTQKAEIKRS EPVKTKAAVV APIAAVAPIA ELDSDNDGVL DSKDNCANTP ATDKVNEVGC
TVFTEAQDTV ELLINFDSNK AVVKEKYKPI MVKVAKFMEA YPDLSLTIKG HSSAKGSAAY
NQTLSAKRAQ AVVDVLINDF GVDASRLNSI GYGESELLNT DNTAAAHEQN RRIEATISTT
NKVAEKR
|
|---|
| |