| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4769 |
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| Symbol | rpoB |
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| ID | 3523343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 5051564 |
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| End bp | 5055592 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637287208 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_271413 |
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| Protein GI | 71278694 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTACT CATACTTTGA GAAAAAGCGA ATTAGAAAGG ACTTTGGTAA AAGCGTACAA
GTAATGGAAT ATCCATTCTT GTTGTCCATC CAACTCGACT CTTTCCGCAA GTTTATTGAT
ACTGATCCAA CAGGTGAAAC CGGTCTAGAG GCTGCTTTCC GTTCTATTTT CCCAATTAAA
GCTTATTCAG GTAGCTCGGA ATTACAATAT GTAAGCTATC GATTAGGTGA ACCGTTATTT
GACGTTAAAG AATGTCAAAT ACGTGGTGTA ACTTATTCAG CACCACTGCG TGTTAAGTTA
CGCTTAGTGG TTTACGATAA AGAAGCCGCA GCAGGTACTG TTAAAGATAT CAAAGAACAA
GAAGTGTACA TGGGCGAAAT CCCGTTGATG ACAGATAACG GTACTTTCGT AATCAATGGT
ACTGAGCGTG TTATCGTTTC ACAATTACAC CGTTCTCCTG GTGTATTCTT TGATCACGAT
AAAGGTAAAA CTCACTCATC AGGTAAAGTA TTATATAACG CACGCGTTAT TCCTTACCGT
GGTTCATGGT TAGACTTTGA ATTCGATCCA AAAGATAACT TATTTGTACG TATAGATAGA
CGTCGTAAAT TACCAGCGTC AATTATCTTA CGTGCATTAG AATATTCGAC TGAAGAAATT
TTGGCGATGT TCTATGACAC AACTGACTAC ACCATTAAAG GTGATAAGTT GATCATGGAT
CTTATCCCTG AACGTCTTCG TGGCGAAACT GCTATTTTTG ATATTTCTAT CAAGAAGGGT
GAAGTATTAG TTGAATCTGG TCGTCGTATT ACAGCACGTC ATATTCGCGC TTTATCAAAA
GCAAAATTGG AAAAACTAGA AGTACCAGCA GATTATATCG TTGGTCGTGT TTTATCAAAA
GCTTACATCG ACAAATCTAC AGGTGAAGTA ATTGCTGAAG CAAATGCAAT TATCACTTTA
GAATTATTAG CCGAGCTTAG CCAAGCGGGC CATAAAGTAT TATCTACTTT ATACATGAAC
GAATTTGATG TTGGTTCATA CATGTCAGAT ACACTTCGTG TTGATAGTTC AACTAACAAG
CTTGAAGCTT TAGTTGAAGT ATACCGCATG ATGCGTCCAG GCGAGCCACC AACGAAAGAC
GCTGCTGAAG GGTTGTTCTC TAACTTATTC TTCGCATCAG AACGCTATGA CTTATCAACG
GTAGGTCGTA TGAAGTTCAA CCGTCGTGTT GGCAATGCAG ATGATGTTGG TACTGGTATC
TTGTCAAAAG AAGATATTAT TTCAGTAATG AAAACCTTAA TCGGCATTCG TGACGGTAAA
GGTGAAGTTG ATGATATCGA TCACTTAGGT AACCGTCGTA TTCGTTCTGT TGGCGAAATG
GCTGAAAACC AATTCCGTGT TGGTCTTGTT CGTGTTGAAC GTGCAGTTCG TGAGCGCTTA
AGTCTTGGTG ACTTAGATGC AATCATGCCG CAAGATTTAA TCAACGCTAA ACCAATTTCT
GCGGCAGTGA AAGAGTTCTT TGGCTCATCA CAATTGTCAC AGTTTATGGA TCAGAACAAC
CCGTTATCAG AAGTAACGCA TAAACGTCGT ATTTCTGCCT TAGGGCCGGG TGGTTTAACC
CGTGAACGTG CTGGTTTTGA AGTACGAGAT GTACATCCAA CGCATTACGG TCGTGTTTGT
CCAATCGAAA CGCCAGAGGG TCCAAACATT GGTTTGATCA ACTCGCTTTC TTGTTACGCA
CGAACTAATG ATTTTGGTTT CTTAGAAACA CCATACCGCA AAGTTATTGA CGGTTTAGTG
ACTGATGAAA TTGATTATTT ATCAGCGATT GAAGAGGGTA ACTTTGTTAT CGCTCAGGCG
AACGCTGAAC GTAATGATAG CAACAAGTTA GTACAAGACT TAGTTAACTG TCGTCATAGA
AATGAATTTA TCTTAAAAGC TTCTGCTGAA GTTCAATATA TGGACGTTTC TCCACAACAA
ATTATTTCTG TTGCGGCGTC ACTTATCCCA TTCCTTGAAC ACGATGATGC AAACAGAGCC
TTGATGGGCT CGAACATGCA ACGTCAAGCT GTACCTACTT TACGAGTTGA TAAACCGCTT
GTTGGTACTG GTATGGAAAA AGTAGTAGCT GTTGATTCAG GTGTAACTGC AGTTGCCAAA
CGTGGTGGTG TAGTTAGCTA TGTTGATGCA TCGCGCATTG TTGTAAAAGT TAATGAAAAT
GAAATGCATG CTGGTGAAGC CGGTATTGAT ATTTATAACT TAACTAAATA CACGCGTTCT
AACCAAAATA CTTGTATCAA CCAACGTCCA GTGTGTCGTA TGGGTGAGCC AGTTGTACGT
GGTGATGTAT TAGCGGATGG TCCTTCAACT GATATGGGTG AATTGGCTTT AGGTCAAAAC
ATGCGTATCG CCTTTATGCC GTGGAATGGT TACAACTTTG AAGATTCAAT GTTGTTATCT
GAACGTGTTG CAATAGAGGA TAGATTTACT ACTATTCACA TTCAAGAGTT AACGTGTATT
GCACGTGATA CTAAATTGGG TAGTGAAGAA ATTACGGCAG ATATTCCAAA CGTAGGCGAA
TCAGCATTAT CTAAATTAGA TGAAGCGGGT GTTGTTTATA TTGGTGCTGA AGTAAATGGT
GGTGACATCT TAGTAGGTAA AGTTACACCA AAAGGTGAAA CACAACTTAC GCCAGAAGAA
AAACTACTAC GAGCAATTTT CGGTGAGAAA GCTGCTGACG TTAAAGATAG TTCATTACGT
GTACCTAACT CTGTTAAAGG TACTATCATC GATGTTCAAA TATTCACCCG TGACGGCGTT
GAAAAAGATG CTCGTGCAGT TGAAATTGAA CAAATGCAAC TTAAAGAAGT TAAGAAAGAT
CTTGGCGATG AATTAAGCAT TTTAGAAGAT GGTATTTACG CACGTACTAA GAAGTTATTG
TTATCTGCTG GTTTAAATGA GTCTGACTTA ACGTCAATGT CTCGTGACAA GTGGTTAACA
CAAAACTTAG CTGATGAAGG TCAACAAGCT GAACTTGAGC AAATTGCTGA GCAATTTGAT
AATATCAAAG AAGATTTTGA TAAGAAGTTT GAAGTTAAGC GTCGTAAGAT CACTCAAGGT
GATGACTTAC AACCTGGCGT TTTAAAAATC GTTAAGGTTT ACTTAGCTGT TAAACGTCAT
ATTCAGCCTG GTGATAAAAT GGCTGGTCGT CATGGTAACA AGGGTGTTAT TTCAAACGTA
GTACCTGTTG AAGATATGCC ATACGATCAA TTCGGTGTAC CAGTTGATAT CGTATTGAAC
CCGTTAGGTG TTCCATCACG TATGAACATT GGTCAGATCT TAGAAACTCA CTTAGGTATG
GCGTGTCGCG GTATCGGTGA AAAGATCAAC CGTATGTTAG AAGCACAACA AGAAATTCAC
AAACTACGTA ACTTCATTCA AGAAGTCTAC AATGTAGGTG AGTCTCGTCA AGTAGTTGAT
GTTGCAAGCT TCTCTGATGA CGAAGTTTTA CGCTTAGCAG GTAACTTACG TGCTGGTCTA
CCAATTGCTA CACCAGCATT TGATGGCGCT GCAGAGAAAG AAATTAAAGA GTTATTCGTG
CTTGCTGATA TGCCACAAAG TGGTCAGTTC GTATTAACTG ATGGCCGTAC CGGTCGTGAG
TTTGAACGTC CTGTTACTGT TGGTTATATG TATATGTTGA AACTAAACCA TTTAGTTGAT
GACAAAATGC ATGCTCGTTC AACTGGTTCT TACTCACTCG TAACTCAGCA ACCACTTGGT
GGTAAAGCTC AGTTCGGTGG TCAGCGTTTC GGTGAGATGG AAGTGTGGGC ACTTGAAGCA
TATGGTGCTG CTTATACCTT GCAAGAAATG CTTACGGTTA AGTCTGATGA TGTTAACGGT
CGTACTAAGA TGTATAAAAA CTTAGTAGAT GGTGATCATC GCATGGAACC AGGTATTCCT
GAGTCATTCA ACGTATTGTT GAAAGAAATC CGCTCGTTAG GTATTAACAT CGAGTTGGAC
AAAGACTAG
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| Protein sequence | MAYSYFEKKR IRKDFGKSVQ VMEYPFLLSI QLDSFRKFID TDPTGETGLE AAFRSIFPIK
AYSGSSELQY VSYRLGEPLF DVKECQIRGV TYSAPLRVKL RLVVYDKEAA AGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD KGKTHSSGKV LYNARVIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPASIIL RALEYSTEEI LAMFYDTTDY TIKGDKLIMD
LIPERLRGET AIFDISIKKG EVLVESGRRI TARHIRALSK AKLEKLEVPA DYIVGRVLSK
AYIDKSTGEV IAEANAIITL ELLAELSQAG HKVLSTLYMN EFDVGSYMSD TLRVDSSTNK
LEALVEVYRM MRPGEPPTKD AAEGLFSNLF FASERYDLST VGRMKFNRRV GNADDVGTGI
LSKEDIISVM KTLIGIRDGK GEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLDAIMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRVC PIETPEGPNI GLINSLSCYA RTNDFGFLET PYRKVIDGLV
TDEIDYLSAI EEGNFVIAQA NAERNDSNKL VQDLVNCRHR NEFILKASAE VQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGSNMQRQA VPTLRVDKPL VGTGMEKVVA VDSGVTAVAK
RGGVVSYVDA SRIVVKVNEN EMHAGEAGID IYNLTKYTRS NQNTCINQRP VCRMGEPVVR
GDVLADGPST DMGELALGQN MRIAFMPWNG YNFEDSMLLS ERVAIEDRFT TIHIQELTCI
ARDTKLGSEE ITADIPNVGE SALSKLDEAG VVYIGAEVNG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK AADVKDSSLR VPNSVKGTII DVQIFTRDGV EKDARAVEIE QMQLKEVKKD
LGDELSILED GIYARTKKLL LSAGLNESDL TSMSRDKWLT QNLADEGQQA ELEQIAEQFD
NIKEDFDKKF EVKRRKITQG DDLQPGVLKI VKVYLAVKRH IQPGDKMAGR HGNKGVISNV
VPVEDMPYDQ FGVPVDIVLN PLGVPSRMNI GQILETHLGM ACRGIGEKIN RMLEAQQEIH
KLRNFIQEVY NVGESRQVVD VASFSDDEVL RLAGNLRAGL PIATPAFDGA AEKEIKELFV
LADMPQSGQF VLTDGRTGRE FERPVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNLVD GDHRMEPGIP
ESFNVLLKEI RSLGINIELD KD
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