| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4681 |
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| Symbol | |
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| ID | 3519148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4949203 |
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| End bp | 4952307 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637287120 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_271325 |
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| Protein GI | 71278229 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3292] Predicted periplasmic ligand-binding sensor domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTGCTACC CCTTAGCTTT AACGTCTATG AGATCTATTT CATTGTTTTT TAATCGCTTT
ATGTATTTTA TTATCTTGCT TGTTGGTGTT TTTATTCCAG CTTATAGTAA TGAGCATCCT
TTAGAGCTTA CTAATGAGTA CTCTGTAGAG CTGTTAACTG AAGACGAGGG TTTTGTTTCT
TCTGAAATAT ATTCGATCAT TCAGGACAAC CAAGACTTAC TTTGGTTTGG CACTGCCGAA
AATGGCGTTA TGCGTTATGA TAGCCGGAAA ATAACCCTCT TTGAATTTGA TAGTATGAAT
TCAAACGGTT TATCTCATAA TGATGCTGGC AATCTCATGT TAGATCGTAA CGGGAGAATA
TGGATTGGTA CTTGGGGCGG AGGCGCTAGT CTTTATGAAC CAAAAACAGG AAACTTTCAG
CATTTTATTA ACGATCCTCT CCGGGTCGAT TCTATCTCAT CTAATCGCAT ACAATCTTTA
TTTCATGACC AAGAAGGTAC TATTTGGTTA GGCTCCTATG ATCATGGCTT AAATCGATAT
CTTGGCAATA ACAATTTTGA GCATATTGAG AAAGATGACA AGGTAGAATC TGGTTTATCC
CATAATAGAA TATGGGATAT AGAAGATAAT GATAAGCAAA GCTTATGGAT TGCGACTAGT
TTTGGCTTGA ATTTATATGA TAAAAATAAT AAAACTTTTT CTCATTTTTT CCCTGACCCA
GATAACCCTA CCCCCACGGG GGCAAATGAA ATAAGAAGTA TTTTAAAAAC TTCAAAAAAC
AAACTTTATG TCGGTACACA AAAAGGCCCC TTTACTTTCG ATAAACAAAG CGGTCTTTTT
ACCCCTTTAA AAACCCTTGA TGATCAATAC CTGGGTCAAG TCAATTCTAT GATTGAGGAT
CAAGAAGGTT ATCTGTGGTT TGTCTCCAGT AAAGGTTTGT TTCGACAATC AAACTCAGGT
CCTCGAATTG AACAATTTGT ACTTGATAAT AATAACGGCT TGAGAATAAT TTTCGAAGAC
AGTTCGAGAA CCATATGGGT TACTAGCGAA ACTCACGGTA TATATAAAAT AGTGCCTCAT
CGTAAGTTTA AATCGATTAA CAGTTCTGCA CTAACAGCAC CAAATGATAT AACCGTTGAT
GCGAATGGTG ATTTGCTAAT TGTCTCATCA TCATCTCAAT TATTTAAATG GCAAATATCC
TCACAAAAAC TAGAAATACT CTCAGCACCA ATCTTTAGCA ATGAAAATGG TTATGGGGTA
AACCGGCTAT TAGAGAAGCC CATAATATTT CTAGATGACA ATAATATTTT ATGGATTGCA
CAAGATGATG GTTTAGCAAA ATTTAATTTG ATAACTAAGC AGATTGATTT ATTAAAATAT
CCAAAATCTG ATCCAAGCTA TAACGAATTC AGAGAGTTAC GAGCGCTCAA TACTGATAAA
TATGGCAACC TTTGGATTGG TACTTATAAA AATGGTGTTT ATCGCTACGA TCCTTTGACA
AAATCTTTTA ATCATTTAGA CGATTCTTTC GGATTATCTC ATCCTGAAGT ATTGGAAATA
TTTAAAGACA ATGCACAAAA CATCTGGGTT GGTACGGGCG ATGGAGTCAA CCTTTGGGAT
GAGAGTAATA AACAGTTTAT TTCATTTAAA AGTGAGCATA ATAACAAAGA TAGTTTATTG
GGAACAATAG TTCAGGATAT ACATCAATCT AAAGATGGAG AGATCTGGAT TGCCACCCAA
AAAGGCCTCA ACTTATACCT GCCTAAAACG AATAGTTTTA AACATTTTAG TAGAAAAAAT
GGCTTACCTA CCTCTTTGAT ACGTGCAATT GAAGATGATA ATAGTGGTCA TTTATGGCTG
ACAACAAATA AAGGTATTTC AAAGCTAAAT CCAATATCAG GAAAAGTAAC TAACTTTGAC
AGTTACAATG GCTTATTAGG TTTAAATTAC TATGCAAATA GCCTGGTTAA GGGTGGAAAT
GAAACACTTT TCACTAGTAG CCAAAGAGGC ATTGAATTCT TTAACACATC GGCTATTGAA
GCTAATAATA GCGAGTTCAA TATTATTCTA ACGGGGTTCA ATAAAATGGG ACACTCCGTA
AAACTTGAAA AACCTTATTC TTATGTAACT GATATTGAGC TTTCTTATAT TGATTACTTT
TTTTCTTTTG AATTCTCAGT ATTAGATTTC ATTTCCCCGA GTAAGAATTT GTATGCTTAT
AAGTTAGAAG GATATGATGA TAATTGGATT GATATTGGTA ATCGCAATGT CGCTTCTTTT
ACAAATTTAG ATGGTGGCTC ATATAAATTT TTGGTCAAAG CAACGAACAG TAGTGGTAAG
TGGGGAGAAA AAATACTCTC TATTAACTTG TATGTCTCGC CACCGCCTTG GAAGACTTGG
TGGGCATATA GCTTATATGC ACTATTAACA CTGCTTGTTG TATTCATTTT TATTTATTTT
AGAACACGTT TTCAACAAAC AGAAATAGCC AGGCAGAAGC AGTTTGTATT AGCACTTGAA
GAACAAGTTG AAGAAAAAAC CGCATCCTTA AATGCAAAAG CAAGTGACTT AATCGCTGCA
AATAAGCAGT TAGAAGTGCT TACCTATCAA GATGGGTTAA CAGGGCTTTA TAATCGCCGA
TACTTTGATA AACAACTGAC AACAGAGATA AATAGACATT ATCGTCAACA GCAATCATTA
TCTCTCATCC TTTGCGATAT TGATCACTTC AAGCTATTTA ACGATCTTTA CGGTCATCAG
CAAGGTGACA ATTGTCTGAA AAGAGTAGCA GAATGTATTG GTACTAACGT AGCAAGAATG
ACAGATGCCA ATTGTCGTTA TGGTGGTGAG GAGTTCGCTA TTATCCTACC CAATACATCA
GTGGAACACT CGACTCTGGT TGCTGAACGT TTATGTTTTG CTATAGAGAA CATGAAAATT
CTTCATGAAA AATCTAAAAC GAGTAACTTT GTCACCTTAA CTATAGGGGT TGTTACTATT
CCTCCTAAGC AAAAAACATC CGTTGACGCA ATTATTTTAA GTGCAGATAA AGCGCTCTAT
ATGGGTAAGA AAAATGGAAG AAATAAGGTT GTCCGAGCTG ATTAG
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| Protein sequence | MCYPLALTSM RSISLFFNRF MYFIILLVGV FIPAYSNEHP LELTNEYSVE LLTEDEGFVS
SEIYSIIQDN QDLLWFGTAE NGVMRYDSRK ITLFEFDSMN SNGLSHNDAG NLMLDRNGRI
WIGTWGGGAS LYEPKTGNFQ HFINDPLRVD SISSNRIQSL FHDQEGTIWL GSYDHGLNRY
LGNNNFEHIE KDDKVESGLS HNRIWDIEDN DKQSLWIATS FGLNLYDKNN KTFSHFFPDP
DNPTPTGANE IRSILKTSKN KLYVGTQKGP FTFDKQSGLF TPLKTLDDQY LGQVNSMIED
QEGYLWFVSS KGLFRQSNSG PRIEQFVLDN NNGLRIIFED SSRTIWVTSE THGIYKIVPH
RKFKSINSSA LTAPNDITVD ANGDLLIVSS SSQLFKWQIS SQKLEILSAP IFSNENGYGV
NRLLEKPIIF LDDNNILWIA QDDGLAKFNL ITKQIDLLKY PKSDPSYNEF RELRALNTDK
YGNLWIGTYK NGVYRYDPLT KSFNHLDDSF GLSHPEVLEI FKDNAQNIWV GTGDGVNLWD
ESNKQFISFK SEHNNKDSLL GTIVQDIHQS KDGEIWIATQ KGLNLYLPKT NSFKHFSRKN
GLPTSLIRAI EDDNSGHLWL TTNKGISKLN PISGKVTNFD SYNGLLGLNY YANSLVKGGN
ETLFTSSQRG IEFFNTSAIE ANNSEFNIIL TGFNKMGHSV KLEKPYSYVT DIELSYIDYF
FSFEFSVLDF ISPSKNLYAY KLEGYDDNWI DIGNRNVASF TNLDGGSYKF LVKATNSSGK
WGEKILSINL YVSPPPWKTW WAYSLYALLT LLVVFIFIYF RTRFQQTEIA RQKQFVLALE
EQVEEKTASL NAKASDLIAA NKQLEVLTYQ DGLTGLYNRR YFDKQLTTEI NRHYRQQQSL
SLILCDIDHF KLFNDLYGHQ QGDNCLKRVA ECIGTNVARM TDANCRYGGE EFAIILPNTS
VEHSTLVAER LCFAIENMKI LHEKSKTSNF VTLTIGVVTI PPKQKTSVDA IILSADKALY
MGKKNGRNKV VRAD
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