| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4654 |
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| Symbol | |
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| ID | 3519147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4914946 |
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| End bp | 4917234 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637287093 |
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| Product | sensory box protein |
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| Protein accession | YP_271298 |
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| Protein GI | 71278228 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.787491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGAAA TAGCGAACAA AGAAACACAG CTACAAAAAG AGATTGAGCA ATTACGTTCA
GAGCTTGTCG CAGCACATCT AAGTAAAGAC GTTCGTACCG CGGAACTTCT TAATAGTGAA
GAGCGCTTTG CTCTGGCTAT GCGAGGTGCA TCGGATGGTC TGTGGGATTG GGATTTAGCT
ACGGATGATG TTTATTACTC CCCTCGCTGG AAAAGTATGC TGGGTTACAG TGAACATGAG
CTCGAAAATA CGTTAAGTAC CTGGGCTGCA ATGGTTCATG TTGATGATAA AGATTTTGTG
CTAAAGAATG TTCATAAATT CTTATCTGGG GAAGTAGACA CATTTGAAGT TGAAATGCGT
ATGCGCCATA AAGTAGGCCA TGACGTTTTT ATTCGCTCTC GTGCTTTTAA AGTAACCCGC
GGTGAGAATA ATGAGACAAT ACGTTTAATT GGTACCCATG TTGATATAAC ACAACAAAAA
AAATCAGAAT TTTTCAATGA AAGAAATACC AAAATTCTTG AGTTAATTGC CAAAGGCAAG
CCCGCCTCTA AAATCTATGC TGAAATTGCG TTAATGTACG AAGAGCGTCA CTCTGGATTA
CGTTGTTCAA TGCTCGAATT AAAGGGGGGG AAGCTGTTAC ATGCGGGTGC ACCTAGCCTA
CCAAAATCTT ATTGCAAAGC AGTACATGGT CTTGAATATG GCCCACAAGT TGGCTCCTGC
GGTACATCTA CTTATACCGG AAAACGAGTA CTTGTCGAAA ATATTGCAAC TGATCCTAAG
TGGGCTGACT TAAAGTACGT AGCACTTCCT TATGGTATGC GCAGTTGTTG GTCAGAACCT
ATTAAAAGCT CTTCTGGAAA AGTATTAGGA GCTTTTGGTA TGTATCATGA CTATCCGGCA
TTGCCTAACG AACAAGAATC TAATGATCTT ACATCAGCAG CTCGACTTGC TGGTATTGTC
ATGGAGCGAG AACAAAATCA AAAACGTATT CAAAACTTAG CCTATACCGA TGAGCTAACT
AAGCTTTCCA GCCGCCCCCA TTTTTATATA AACATTGAAG AGTTAGTAAA AATATCAGCA
CGTGAAAAAA ATAAGTTTGG CCTGTTATAT ATCGATCTTG ATAATTTTAA GACGGTTAAC
GATAGCCTAG GGCATGACGT TGGAGACTTA CTCCTTAAGA AAGTTGCACA GCGTTTAAAA
AGCGCATGTC GTGAAATTGA TTATATTGCT CGCCTTAGTG GCGATGAATT TTGTATTGCC
GTTAATAATG TGATGGATGA CTACGGTGCT GCTCACGTTG CGCAACGTTG TCTTGAACTG
ATATCAAAAC CTGTAGAGCT AGCTGGAAGA AAGTTTACAC CAGCCTGTAG CATTGGTATT
GCACACTATC CCGACGATGG AATCGATCTG CAAACTATAT TAAAAGCAGC AGATACTGCG
CTGTATGCGG CGAAGGATCT TGGAAAAAAT AGGTTTGCTT TTTATAAGAA AGAGCTAACC
GATAAAGCAG AATACCGTTT TAAAATAGAA CAACATTTAA GAGAAGCGAT AGAACAACAA
CAATTGTCAC TCGTTTATCA ACCAAAAGTT GATATTAAAT CGGGCAACAT CATAGGCGTT
GAAGCTTTAT CTCGTTGGAA TCATCCACTG CTCGGTCAGG TTTCTCCAGT AGACTTTATC
AGCATGGCCG AACAAATCGG CATGATAAAA CCACTCACTG AATGGGTCTT GAAAACAGCT
TGTAACCAGG CAACGTTGTG GAAGGAAGCT GGTTTTTCTT CAATTATAAT AGCTGTTAAT
ATATCACCAA GTCATTTTCT TGATAGTGAT CTGGTGCCAC TGATCAAGCG TGTTATTAAA
GAAACAGGAA TGTTGCCGGG TGATCTTGAA CTAGAAGTGA CTGAAGGGGT GATACAGACT
AACCCAGAAA ATCTTGCCGT TTTTGAACAT TTAAAAGAGC TGGGTATATT ACTGGCAATT
GATGATTTCG GCGTTGGTTA TTCATCCTTC GCCTCACTGA AACATCTTAA TGTAGACTAC
TTAAAAATTG ATAAATATTT TATCGATGAC ATTCTTGTCG ACCATAAAGC AAAACTTTTG
GTTGGTTCGA TGATTGAAAT GGGTCATAAC CTTGAGCATA AAATTACAGC TGAAGGTATT
GAAAGCGAAG AACAAGCGAC TATGCTTCAG GAGCTTGGTT GCGATTATGC ACAGGGGTAT
TTTTTTAGTA AACCCGTTAG TGCCAATCAA ATTTCAAAAT TATTAGGTAG AAAATTAACA
GGACAGTAA
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| Protein sequence | MTEIANKETQ LQKEIEQLRS ELVAAHLSKD VRTAELLNSE ERFALAMRGA SDGLWDWDLA
TDDVYYSPRW KSMLGYSEHE LENTLSTWAA MVHVDDKDFV LKNVHKFLSG EVDTFEVEMR
MRHKVGHDVF IRSRAFKVTR GENNETIRLI GTHVDITQQK KSEFFNERNT KILELIAKGK
PASKIYAEIA LMYEERHSGL RCSMLELKGG KLLHAGAPSL PKSYCKAVHG LEYGPQVGSC
GTSTYTGKRV LVENIATDPK WADLKYVALP YGMRSCWSEP IKSSSGKVLG AFGMYHDYPA
LPNEQESNDL TSAARLAGIV MEREQNQKRI QNLAYTDELT KLSSRPHFYI NIEELVKISA
REKNKFGLLY IDLDNFKTVN DSLGHDVGDL LLKKVAQRLK SACREIDYIA RLSGDEFCIA
VNNVMDDYGA AHVAQRCLEL ISKPVELAGR KFTPACSIGI AHYPDDGIDL QTILKAADTA
LYAAKDLGKN RFAFYKKELT DKAEYRFKIE QHLREAIEQQ QLSLVYQPKV DIKSGNIIGV
EALSRWNHPL LGQVSPVDFI SMAEQIGMIK PLTEWVLKTA CNQATLWKEA GFSSIIIAVN
ISPSHFLDSD LVPLIKRVIK ETGMLPGDLE LEVTEGVIQT NPENLAVFEH LKELGILLAI
DDFGVGYSSF ASLKHLNVDY LKIDKYFIDD ILVDHKAKLL VGSMIEMGHN LEHKITAEGI
ESEEQATMLQ ELGCDYAQGY FFSKPVSANQ ISKLLGRKLT GQ
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