| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4646 |
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| Symbol | |
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| ID | 3518617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4906295 |
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| End bp | 4907689 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637287085 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_271293 |
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| Protein GI | 71277875 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.220862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACGTC GATTTCGACT ACTGCTTCCA TTATTCTCAA GCCTGTTATT ATTAGCTTGC
AGTAGCACTT CACAAGTAGA TGAAAAATTA AAAGACCTTC CTCTTCCCAA AAACTGGCAA
GATAGCCAAC AAGCCTTGGC CGTTGAACAT AATTGGTTAT CTGAACTTGA TAACTTACAA
GTTCATCAAT TAGTAAAAAA GGCATTAGCG GCTAACCATC AATTTGCCAT GCAAGCTTAC
ACACTCGAAA TAGCCGAACA GCAACTTATC ATCTCGGGTA GCCAACTTTG GCCAGAGCTT
GATCTAGCAT TTCGTAGTGG CCGTAATAAA GACAATCAAA CCGATAGTTA TTCAAACAGT
AACTCAGTTA ACTTGAATTT AAGCTATGAA GTGGATATTT GGGGCAAGTT ATCTGATGCC
GATCGCATGA CTAATTATAA CTATCTCGCG CAAAAAGCCA CTTTTGAGCA ATACAAGCAG
CAGCTTGTTG TCAACGTATT AACAACTTGG TTTCGCGTGA TTGAGGCAGA AAAATTGCTC
GCCCTTTATC GCAGCAGAGT TGCAAATTCT CAGCAGAATT TAGCTATCAT TGAAGCAGGC
TATAATTCAG GGTTAACCGC TGCACTTGAT GTCTACTTAA CACGTAACGA TTTGAACAAC
GAGTTAACGA GAGTATCAGA GCAAGAAACA GAAAGAACCA AACTAATTAG ACAGCTTGAA
CGCTTGATTG GTGAATATCC GAAAGGCGAG CTTTTAGTCA ATGCTAACTT ACCTTTACTC
ACCACAGACA TTCCTGTTGG CTTACCGTCA GAACTAATCA GCCGAAAGCC AGAATTAAAA
GCCAGTTGGT ATCAATTGTT ATCGCAAGAT GCCGGCTTAG CTTATGCGCA TAAACAACGT
TTTCCTAGCA TTGTATTATC AGGTTCGATC GGTGACTCTA CCGCAGACAT TGGTGACTTA
CTCTCTGGTT CTTCATTGGC ATGGTCACTA CTGGGCAGTG TCTCAGCACC CATTTTTAAT
GCTGGGCGCC TGAAAGCAAA TGAAGAAAAA GCCCGTATAG AACTCAAACA AGGTGAACAG
TTGTACCTTG ATACTTTATA TAACGCTTTT AGTGATGTTG AAAATGCTAT CACCACTGAA
AAGAACTTAA AGAACAGTTA TTACACCATG TTGGCCGCAC AAGAAAATGC AAAAATCGCC
TCCACATTAT CTTTCGAACA ATACCAAAGT GGTTTAGTTA CCTATACCAC GGTGCTTGAT
GCGCAAAACC GTTCTTTTGA AGCACAATCG ACACTGATAA AAATTAAAAA CCAACTCATT
GCCAATAGAA TCAATTTACA TCTTTCCTTG GGTGGCGACT TCACCACGCC GTCACTTGAA
AATAAGGCCG AATAA
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| Protein sequence | MTRRFRLLLP LFSSLLLLAC SSTSQVDEKL KDLPLPKNWQ DSQQALAVEH NWLSELDNLQ
VHQLVKKALA ANHQFAMQAY TLEIAEQQLI ISGSQLWPEL DLAFRSGRNK DNQTDSYSNS
NSVNLNLSYE VDIWGKLSDA DRMTNYNYLA QKATFEQYKQ QLVVNVLTTW FRVIEAEKLL
ALYRSRVANS QQNLAIIEAG YNSGLTAALD VYLTRNDLNN ELTRVSEQET ERTKLIRQLE
RLIGEYPKGE LLVNANLPLL TTDIPVGLPS ELISRKPELK ASWYQLLSQD AGLAYAHKQR
FPSIVLSGSI GDSTADIGDL LSGSSLAWSL LGSVSAPIFN AGRLKANEEK ARIELKQGEQ
LYLDTLYNAF SDVENAITTE KNLKNSYYTM LAAQENAKIA STLSFEQYQS GLVTYTTVLD
AQNRSFEAQS TLIKIKNQLI ANRINLHLSL GGDFTTPSLE NKAE
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