| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4617 |
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| Symbol | rnr |
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| ID | 3520956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4874749 |
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| End bp | 4877229 |
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| Gene Length | 2481 bp |
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| Protein Length | 826 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637287056 |
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| Product | ribonuclease R |
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| Protein accession | YP_271264 |
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| Protein GI | 71280490 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCTATA ACGATCCACA CGCTAAACGC GAAGCCAAAA AATATGAAAA GCCAGTCGCC
TCACGCGAAT TATTGCTATC AATCATCGAA AAATGCTCGC CGCCACCAAG TTTTAATAGC
TTGGTCAAAA CACTAAAGTA CGATGAAGAG TATCAACTTA TTGGTTTGAA GCGTCGTTTA
CGTGCGATGG AAAACAGTGG TCAGTTGATT TTTAATAAAT TCAAACAATA CGCACTGCCG
GAAAAAAATA GCCTGCTTAG CGGCAAAGTT ATTGGCCATC GTGACGGTTT TGGTTTCTTT
TCTCCTGATG ATTCATCTAT TACCGATAAA AGAGGTAAAG ATTTCTATAT TTCCTCCCAC
GAAATGCAGC GTGTCTTTCA TGGTGATATC GTGCAAGCCA TTTTGGTTGA CCGTACCGAT
CGTAAAGGTC GAAAAGAAGT CAAGATACTG GAAGTTATAG AACCAAGGAA AGCACCTATC
GTTGGTCGAT TATATATTGA TCATCATGTT TGCTCTGTTG TGTCAGAAGA CAGTAAAATC
AAACAAGAAG TATTGATTGA TCCACAAACT AAAATGGGTG CTAGACACGG GCAAATGGTC
GTCGTTGAAT TAGTTCAAAG GCCGACTAAA CGTTCTCATG CTATTGGTAA AGTGATTGAA
GTTTTAGGAG ATCACCTCGC TCCTGGGATG GAAATAGAGA TAGCCTTGCG CGCCCATGAC
TTACCCCATC AATTTCCTCA CGCAGTACAA GCTGAAGTGG CTAGTATTGC TGATGAAGTT
GAAGAGTCAT CTAAATTACC ACGTAAAGAC TTACGTGACT TACCTTTGGT TACTATCGAT
GGCGATGATG CTAGAGATTT TGATGATGCT GTTTATTGTG AACCAAAAAA ATCAGGTGGT
TGGCGTTTAT GGGTGGCAAT TGCTGACGTA AGTTATTACG TTCAGCACGG CACGGCGTTA
GACGATGAAG CGATATCACG TGGTAACTCA GTGTATTTTC CTAGTCAAGT TATCCCTATG
TTGCCAGAGA AACTTTCTAA TGGTTTGTGT TCACTCAACC CCGACGTAGA TCGCTTATGT
ATGGTGTGTG AAATGACCAT CAGTGCTACC GGAAAACTAT CAGGTAGTAA GTTCTATCCC
GCAGTAATGC GTTCTCATGC TCGTTTTACT TACACCAAAG TCGCTGCGAT TCTCGACGGT
GATGAAGCGC TTTGTCAAGA ATACCAAACC TTAGTGCCTG ATTTAAAAAA TCTTGAACAT
ATGTATCACG CGCTAACAGA TGCTCGTCTT AAACGTGGCG CTATCGCTTT TGAAACGCAA
GAATCTATTT TTATCTTCAA TGAAGATAAA AAAATTGCCA GTGTCGAAGC GCTTATTCGC
AATGATGCCC ATAAAATCAT TGAAGAATGT ATGATTATGG CCAATGTTGC GACAGCCAAA
TTTATAGAAA AACATGAAAA GCCAGGTTTG TTCCGTGTTC ATGATAAACC TAGCGAAGAT
AAGTACCGTA ACTTTGTTAC CTATTTAAAT GAACTTGGTT TATCTCTGCC GTCAAAAGAA
GCACCGGAAC CAAGAGATTA CGGTGATATT TTAGCGAAAG TTGCAGGTCG ACCTGACCAA
GAGCTTATTC AAACCATGTT GTTACGCTCA ATGCGCCAAG CTGTCTATCA AAGTGACAAT
GAAGGCCATT TTGGTTTAGC ACTACCCTCT TATAGTCATT TCACCTCACC TATTCGTCGC
TATCCTGATT TAGTGGTGCA TCGAGTGATC AAAGCTATTT TAGAAAAAGA AGCGAAAAAT
GCTGCCAACG AAGGTAACTA TGAATATTCT TTAGAGGAAG TTATAGAGCT GGGTGAGCAT
TGTTCTATGA CAGAGAGACG CGCTGATGAA GCAACTCGCG ATGTTGCTGA TTGGCTCAAA
TGTGAGTTTA TGCAAGACCA TGTTGGTGAT AACTTTACCG GTGTTATTTC AACAGTAACT
AACTTTGGTA TGTTTGTTCG CTTACAAGAT TTACATATTG AAGGTTTAGT TCATATCACT
TCTCTTGGTC GTGATTTCTA TCATTTTGAT GATGTACGTA TGTGCCTATC CGGTGAGAAT
AGTGGCAAAA AGTACCGTGT TGGTGATGAA ATTCGGGTAC AAGTTGCCGC GGTAAACCTT
GACGAAAAGA AAATAGACTT ACGACTTGAA GGCTCTGAAG CTGAAGAAAG CCAAGGCAAA
CCTAAAGGCA AGTCGAAAGG TAAAAGCTCT AGACGTTCAA CGTCAAAGTC AGCTGAGAAT
AAACCAGAAG CTAAGACTGG AACTCAAGCA ACTACAGCTA AGAGTGATAA ACCTAAAAGC
AAGTCTAAAG GTGGTTCAAA AGACAAATCT AAAGACAAAT CTAAAGACAA GCCAAAAGAA
AAAAGCAAAG CAAAAAAACG CAGTGCACGT AAAAAACGCC CAGGAAAAAA TGCCCGTAAA
AGTTCGGAAA ATAAGGCTTA G
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| Protein sequence | MTYNDPHAKR EAKKYEKPVA SRELLLSIIE KCSPPPSFNS LVKTLKYDEE YQLIGLKRRL
RAMENSGQLI FNKFKQYALP EKNSLLSGKV IGHRDGFGFF SPDDSSITDK RGKDFYISSH
EMQRVFHGDI VQAILVDRTD RKGRKEVKIL EVIEPRKAPI VGRLYIDHHV CSVVSEDSKI
KQEVLIDPQT KMGARHGQMV VVELVQRPTK RSHAIGKVIE VLGDHLAPGM EIEIALRAHD
LPHQFPHAVQ AEVASIADEV EESSKLPRKD LRDLPLVTID GDDARDFDDA VYCEPKKSGG
WRLWVAIADV SYYVQHGTAL DDEAISRGNS VYFPSQVIPM LPEKLSNGLC SLNPDVDRLC
MVCEMTISAT GKLSGSKFYP AVMRSHARFT YTKVAAILDG DEALCQEYQT LVPDLKNLEH
MYHALTDARL KRGAIAFETQ ESIFIFNEDK KIASVEALIR NDAHKIIEEC MIMANVATAK
FIEKHEKPGL FRVHDKPSED KYRNFVTYLN ELGLSLPSKE APEPRDYGDI LAKVAGRPDQ
ELIQTMLLRS MRQAVYQSDN EGHFGLALPS YSHFTSPIRR YPDLVVHRVI KAILEKEAKN
AANEGNYEYS LEEVIELGEH CSMTERRADE ATRDVADWLK CEFMQDHVGD NFTGVISTVT
NFGMFVRLQD LHIEGLVHIT SLGRDFYHFD DVRMCLSGEN SGKKYRVGDE IRVQVAAVNL
DEKKIDLRLE GSEAEESQGK PKGKSKGKSS RRSTSKSAEN KPEAKTGTQA TTAKSDKPKS
KSKGGSKDKS KDKSKDKPKE KSKAKKRSAR KKRPGKNARK SSENKA
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