Gene CPS_4609 details

Gene Information

• Locus tag: CPS_4609
• Symbol: nagZ2
• ID: 3520622
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 4864498
• End bp: 4866411
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637287048
• Product: beta-hexosaminidase
• Protein accession: YP_271256
• Protein GI: 71280158
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1472] Beta-glucosidase-related glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAGTTT CAATTGCGCT TAGCGCTTGT CAAAGTCAGG CAACAGAAAA AAATATGACC 
CATAACTCCA CTAGTACTAA TACATTCACT CCATTTGAGC GAAAAGTTGC ACAAAGAATG 
TCGCTCGATA TTCGATACTT TTGTTCTGAT ATAGATGGTA AGGCCAGTGT GCCAACATCA 
AAACATTGCC GACAAGTAGT GACTGAGCTA CCCAAAGAAC TTGCGCAGAT GATAAGCACA 
AGTAATGTCG GTGGTATCGT ATTATTCGCT GAAAATGTGC AAGAGATAGC GCAAGTGGTG 
AAGCTAACCC ATGATATTCA AGCCGCGGCA TTAAAGTCAG AACAAGGAAA CCCCTTGATT 
ATCTCAATAG ACCAAGAGGG CGGTCGAGTA GCTCGCTTTG CTAAAATGAC TGGCTTTGCT 
GGAAATATGG CTATTGGCGC TAGCTATCCT GAGCATGGTA CTCACTTTGC TACGCAAGTT 
AATGCAGTTA TTGCTAAAGA ACTAAAAGCC TTAGGTATCA ATAATAATTA TGCCCCTGTC 
GTTGATGTAA ATACCAATGT TGACAACCCG GTGATTAATA CGCGCTCTTT TGGCGAGTCC 
GCTGTCCAAG TAGCCGAACT TGGTGCTAGT GCGGTAACAG CCATTCAAGC ACAAGGCGTG 
ATGGCAACCT TGAAGCATTT TCCTGGTCAT GGTGATACGC ACGTTGATAG TCACTTAGGT 
TTACCACGAG TTGATCATGA CAGAGCGACT ATAGATAAGG TGGATCTTGC ACCTTTTGCT 
TGGGCTATTG ATCACGCTAA ACCCGCGATG ATAATGACGG CTCACATTCA GTTTCCAGCC 
CTAGATAACA GTTTATTTAT CAGTAAAAGT GGCGATAAAC TTATTCGCCC AGCGACCATG 
TCCCGTAAAA TATTAACCAA CTTGTTAAGA GAAGAGATGG AGTTTGATGG CATTATTGCG 
ACGGATGCTC TTGATATGGC GGGTGTTACT CACTTTTTTA CTGACATTGA AGCTGTCGTT 
GAAACCTTTG TGGCAGGTGC AGATCTTGCC GTGATGCCAT TTAAGGTTCG AACACCAAAT 
GATATCGACA ATTTTTATAA CTTTATAAAA GCAGTGGCCA AGGCCTTAGC AATACGCATT 
GAGCACAATG AATATCAGTT AACTGAGTTT GAACAATCGA TAGTGAGATT AAACCGATAT 
AAGAAACAAT ATATTGAAGT GGCCAATGAA TCAGTAGCAC AACAACTGCT CTCGGTTAAT 
GCTGTTATTG CTAATGAAAA GCATATTATT ACAGAGCAAG CGCTTGCCAA TGCCGCGGTA 
ACATTATTGA AAAATAACCA GTTGTTACCT CTTACTGTAA CAGGTATTAA ACGAATACAT 
TTTGTTGTCG CAAATCAGCA AGAACTGGTG GCGTTAACTT ATGCGACTAA TAAGGTATTA 
GCGCAAATAT TGCCAGCAAG TGAGGTTGAA AAAATTAGCA TTAGCCACTT TATTGCCGGT 
AATACCGAGT CGGATAAACA AATGAAGTCG CTGCTAAGTG AAGCGGATGT CGTCATTGCT 
ACTGTTGATA TTAAAACGGC CAGTTTAGTT GATTTAGGCG GTATGGATGA TTTAACGCCA 
AGTTATGGTA GTGCTGCTCA GCAACAGAAA AAACTGACCT ATGCAACGTT ATTAAAACAG 
CAACTTACGC TAGCGGGAAA GCTAGGAAAG CCTTCTATAC TTATTGCTAA AGGTTCTCCC 
TTTTTAATAA ATGAGTACAG TGAACTAGCC GATGCAGTGT TGTTAAACTT TGACGATAGA 
ATCTATGAGA GTAAAAATCA GCAAAGTATA AGCCCAGGGT TTAATGCCAG CATGGCAGTT 
GTTTTCAATG AAAGAAAGGC TTTAGGTAAA CTACCTGTAA CGTTGAAAAG GTAA 

 

Protein sequence

MIVSIALSAC QSQATEKNMT HNSTSTNTFT PFERKVAQRM SLDIRYFCSD IDGKASVPTS 
KHCRQVVTEL PKELAQMIST SNVGGIVLFA ENVQEIAQVV KLTHDIQAAA LKSEQGNPLI 
ISIDQEGGRV ARFAKMTGFA GNMAIGASYP EHGTHFATQV NAVIAKELKA LGINNNYAPV 
VDVNTNVDNP VINTRSFGES AVQVAELGAS AVTAIQAQGV MATLKHFPGH GDTHVDSHLG 
LPRVDHDRAT IDKVDLAPFA WAIDHAKPAM IMTAHIQFPA LDNSLFISKS GDKLIRPATM 
SRKILTNLLR EEMEFDGIIA TDALDMAGVT HFFTDIEAVV ETFVAGADLA VMPFKVRTPN 
DIDNFYNFIK AVAKALAIRI EHNEYQLTEF EQSIVRLNRY KKQYIEVANE SVAQQLLSVN 
AVIANEKHII TEQALANAAV TLLKNNQLLP LTVTGIKRIH FVVANQQELV ALTYATNKVL 
AQILPASEVE KISISHFIAG NTESDKQMKS LLSEADVVIA TVDIKTASLV DLGGMDDLTP 
SYGSAAQQQK KLTYATLLKQ QLTLAGKLGK PSILIAKGSP FLINEYSELA DAVLLNFDDR 
IYESKNQQSI SPGFNASMAV VFNERKALGK LPVTLKR