| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4591 |
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| Symbol | gspD |
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| ID | 3521187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4844410 |
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| End bp | 4846503 |
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| Gene Length | 2094 bp |
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| Protein Length | 697 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637287030 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_271238 |
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| Protein GI | 71280718 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAAA AGTTTTTACT CATTCTAACG ACAGCGATAA CCATCAATTG CTTATGTTTG
GTTGGTCAAG CAAGTGCCGC TCAGTATTCT CCTAATTTTA AGGGCACTGA AATTACCGAA
TTTGTAAATA TCGTTGGTAA AAACCTGAAA AAAACCATGA TAGTAGATCC CAATGTCCGC
GGAAAAATCA ATGTCCGTAG TTATGATTTG TTATCGGAAA AACAATACTA TCAATTCTTT
CTCAATGTGC TTGAAGTGTA TGGTTATGCT GCCGTTGAAA TGGACAATAA TATTGTCAAA
ATTATTCGTA ATAAAGACGC GAAAACAGCG GCTATTCCTG TAGTAGGTAA TAAAAGTAAT
ATCATCGGTG ATGAGATGGT TACCCGTGTT GTTGAAGTGA AGAATGTTAC GGTACGTGAA
TTAGTGCCAC TGTTACGACA ATTGTCAGAC CAAGCGGGTG GCGGCAATGT CGTAAACTAC
GACCCTGCTA ACGTGATCAT GTTAACGGGT ACCGCTTCAA CAGTTAATCG ACTAGTAAAA
ATTATTGAAC GTGTTGATAG AGCGGGTGAT CAAGATGTTG AAATTATCAA ACTTAAGTAT
GCTTCAGCGG GTGAAATGGT ACGTATCATC GAAGCGATGA ATAAACCTTC TGGTGGTAAA
GCAGGTCAAC CTACTTTTTT AATTCCTAAA ATTGTTGCCG ATGATCGGTC TAATAGCGTG
ATTGTTAGCG GTGAAGTGAA AGCCCGTGAA CGAGTAGCAC GCTTGGTTAA ACGTTTAGAT
AGTGAATTAG AAAGTAACGG TAATACTCGG GTGTATTACC TTAAATATTC AAAAGCTGAA
GATTTAGTTA AAGTGCTGCA AGGTGTTAGT GACTCAATTG CTTCAGAAAC AACGACAGCG
AAAACAAAAA CACGTTCTAG TAAAAAACGT GACGTAAGTA TTGAAGCGCA TGAATCAACT
AATGCCTTAG TAATTACCGC ACAACCCGAT ATGTTACGTT CATTAGAGGC TGTAATTCGT
CAATTAGATG TGCGTCGCGC ACAGGTATTA GTTGAAGCGA TTATCGTTGA AGTGTTTGAA
AGTGACGGCG TTAGTTTAGG TGTTCAGTGG TATAACGAAG CAGGTGGTTT TACGCAGTTT
ACTAATGGCC CTGCGAGCAT TTCTTCGGTT GCTGCAGGAG TTCAAGCAGC GGAAGGAGAA
CCTGCGACTA AAGTAACTAC TATTGACGCA AATGGTAACC CTGTAATATC AGAAAATCCT
TCTACTGACG GTGATTATAG CATTCTTGCT CAAGTACTCG GTAATGTTAG CGGTATGATG
TTTGGTATTG CTAAAAATGA CTGGGGCGCG ATTGTGAGTG CGGTAAGTAG TGATACTAAT
TCGAATATTT TAGCTACGCC GAGCATTACC ACCTTAGATA ATGAAGAGGC TTACTTTATT
GTTGGTCAAG AAGTGCCAAT TATTACCGGT TCAGCAACGG GTAGTAATAA CGCCAACCCT
TTCCAGACAG TAGACCGTCA AGAAGTGGGC ATTAAACTAC GTGTTACCCC GCAAGTGAAT
GAAGGCAATG CGGTGCAACT GATTATTGAA CAAGAAGTGT CTTCAGTCAG CGGTACCACA
GGTGTAGATA TCTCAATTAA TAAAAGAGAG ATTAAAACCA CTGTAATGGC TGATAGTGGC
GATACCGTGA TACTCGGAGG TTTGATAGAT GAAGACGTGC AAGAAAGTGT GCAGAAGGTG
CCAATTCTTG GTGATATTCC AATTATTGGT CACTTGTTTA AATCAACTAG CAACAGCACA
CGTAAGCGTA ATTTAATGGT GTTTTTACGC GCTACAATTG TTCGTGATTC AGCGTTAATG
ACAGAGATTA GTGAATCAAA ATATAACTAC ATTCGTGCTG ATCAAATTCG TAAACATGAG
GAAGGTTTAT CGTTAATGAG TAACGAAAAC ATGCCAATCT TACCGCAGTG GCAAGATAAC
CTAACCTTAC CACCGTCATT TAATGAGTAT CAGCAGAAGC TTGAGGACAA AGGTACAGAG
TTACCTAAAC CTCCTGTAAC AACAGAAGGC GTTGCTGCGG AAGAGAAGCA ATAA
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| Protein sequence | MMKKFLLILT TAITINCLCL VGQASAAQYS PNFKGTEITE FVNIVGKNLK KTMIVDPNVR
GKINVRSYDL LSEKQYYQFF LNVLEVYGYA AVEMDNNIVK IIRNKDAKTA AIPVVGNKSN
IIGDEMVTRV VEVKNVTVRE LVPLLRQLSD QAGGGNVVNY DPANVIMLTG TASTVNRLVK
IIERVDRAGD QDVEIIKLKY ASAGEMVRII EAMNKPSGGK AGQPTFLIPK IVADDRSNSV
IVSGEVKARE RVARLVKRLD SELESNGNTR VYYLKYSKAE DLVKVLQGVS DSIASETTTA
KTKTRSSKKR DVSIEAHEST NALVITAQPD MLRSLEAVIR QLDVRRAQVL VEAIIVEVFE
SDGVSLGVQW YNEAGGFTQF TNGPASISSV AAGVQAAEGE PATKVTTIDA NGNPVISENP
STDGDYSILA QVLGNVSGMM FGIAKNDWGA IVSAVSSDTN SNILATPSIT TLDNEEAYFI
VGQEVPIITG SATGSNNANP FQTVDRQEVG IKLRVTPQVN EGNAVQLIIE QEVSSVSGTT
GVDISINKRE IKTTVMADSG DTVILGGLID EDVQESVQKV PILGDIPIIG HLFKSTSNST
RKRNLMVFLR ATIVRDSALM TEISESKYNY IRADQIRKHE EGLSLMSNEN MPILPQWQDN
LTLPPSFNEY QQKLEDKGTE LPKPPVTTEG VAAEEKQ
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