| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4587 |
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| Symbol | gspH |
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| ID | 3518850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4840340 |
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| End bp | 4840960 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637287026 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_271234 |
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| Protein GI | 71278555 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.248042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAAATT TATCGGAATT GGCAATAAGA CAACGCGGCT TCACCTTAAT TGAGGTGATG
GTGGTGGTAG TGCTGATTGG CCTAATGGCC AGCTTGGTAC AATTTAACTT TTCCGGCAAT
AACCCTGAAG ATAAATTAAA GCATGAGAGT GCTCGTTTTG CCGCTATTTT TGAAGTGGCT
GCTGAGTATG GCATGCTCAA TAATATTGAA TTAGGTTTAA TAGTTAAAAA AGATAGTTAT
CAGTTTGTTG GTTATGATGG TACAAAATGG GCCGAAATCC CCGAGCAAGA TTGGCAAGCT
AATGTCACCG TACCTGAAGA AATAGAGCTC AGCATAGAGC TGGATGACTT ACCTATTGAA
GAGCCTATGC TTTTTGATGC CGATACTTTT AAAGAAAAAG ATGAAGACGA CTTCACCTTG
CTTTCGAAGG AAGAGCGAGA AGAGAAAATA ATCCCGCAAG TGTATATTCT CTCTGGCGGA
GATCTTAGTC CTTTTAGTGT AACTTTTCGT TTAACTGAAG AGCTGGCCTA TATCGAAGGT
GCTGAAGATT TAGCTTATCG CGTCACAGGA CTGTATAACG TGCCTTTAAC TATTGAGGGG
CCCGTGCTTG ATGATGATTA A
|
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| Protein sequence | MRNLSELAIR QRGFTLIEVM VVVVLIGLMA SLVQFNFSGN NPEDKLKHES ARFAAIFEVA
AEYGMLNNIE LGLIVKKDSY QFVGYDGTKW AEIPEQDWQA NVTVPEEIEL SIELDDLPIE
EPMLFDADTF KEKDEDDFTL LSKEEREEKI IPQVYILSGG DLSPFSVTFR LTEELAYIEG
AEDLAYRVTG LYNVPLTIEG PVLDDD
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