| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4585 |
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| Symbol | gspJ |
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| ID | 3520165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4839308 |
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| End bp | 4839967 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637287024 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_271232 |
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| Protein GI | 71279705 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.979233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACATG GTATTTACCA GACTAATGCC ATAGATAAAC CTGCACAGCA AGGTTTTACC
TTGCTAGAGG TATTGATTGC AATTGCTATC TTTTCAGTGG TGAGTTTGGC GAGTTTTACC
ATTTTTGATA CCGTTTTACG TGGTGATGAA AATTCAAAAG TTCGTAGTGA AAGACAGAAT
GAATTACAAC GTGCATTTTT ATTAATGGAA CGTGATTTTA CCCAAATAGC AAAACGTACA
ATCCGTATTA ATGGCGAAGC GCCAAATAGT GCTTTTTTAC AAACCTCAGA TGATAGTTTT
TTAGCCGATG AACAAGCTAT TGCTTTTGTA CGAAATGGTT GGACTAACCC CGGATTACTG
CTGCCGCGAA GTGATATGCA AAGCGTAGCC TATCGCTTGG TTGATGAAAC GCTAGAGCGC
TTACATTATA ATTTTGTTGA TGCCGTTGTT GGACAAGAGC CAAGAATAAG GCCATTAATA
ACGCAAGTCA CTAGTTTATC CTTTGAATTT TATGATGGCA GCAAGTGGCA AAAACAATGG
TCAGGAAAAA AACTACCGCA AGCGATTGCT ATTGAAATTG AAACTCGGGA TTATGGCTTA
ATTCGTCGTC AGTTTTTAGT GGCGGGTGAC CTTGCTACTG ATGATAAGAG TAAGACTTAG
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| Protein sequence | MKHGIYQTNA IDKPAQQGFT LLEVLIAIAI FSVVSLASFT IFDTVLRGDE NSKVRSERQN
ELQRAFLLME RDFTQIAKRT IRINGEAPNS AFLQTSDDSF LADEQAIAFV RNGWTNPGLL
LPRSDMQSVA YRLVDETLER LHYNFVDAVV GQEPRIRPLI TQVTSLSFEF YDGSKWQKQW
SGKKLPQAIA IEIETRDYGL IRRQFLVAGD LATDDKSKT
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