Gene CPS_4576 details

Gene Information

• Locus tag: CPS_4576
• Symbol: mshL
• ID: 3520701
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 4829825
• End bp: 4831654
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637287016
• Product: MSHA biogenesis protein MshL
• Protein accession: YP_271224
• Protein GI: 71280237
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02519] pilus (MSHA type) biogenesis protein MshL

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAAAA CAAGTCCCCC TATGAATAAA CTAAAATTAA ACATTGCTTT GTCAGCGTTT 
TTCTTTGCCT TAGTAGGCTG TCAATCTATG CCGAATGATC CTGTAGACAT AAAAGCAGAT 
TTAGATGCGT CGATCAAAGA AACTAAACGT TTAAATGGAC CAAAGGCCTT AACGCAAGTG 
CCAAATTCAG TACAGCAAGA GTTAATGCTA AATAACATGG ATCAGGCTAA GCAAGGCATG 
TTAGCTGAAA AACGCTTGGA GGTCTCAGCG ACAGAAGTTG ATGCCAAAGA CTTTTTTCAA 
GCCATTGTTA GAGGCTCACG TTATAACGTA GTTATTCATC CAGATGTCAC AGGACAAATA 
TCTTTAAGCT TGAATAATGT TACGTTATCA GAGGCCTTAA CCGTCGTTGA AGATGTCTAT 
GGTTATGAAA TTATTCGCCG TGGCAATGTT GTAAAAGTTT TCCCGCCGGG CATACGTACT 
GAAACTATCG CACTAAATTA CTTATTCCTA AAACGTTTTG GTTCATCTAG TACTACTATC 
AATTCTGGTG GTGTTTCTGA AAACGATCCC AACAGTGGCA ATAGCAGTAA CGGCAATAGC 
AGCAATAGCA ATAATAGTAA TAGCGGCAGT AACAACAACC AAAGTGGTAA TAATGGCTCG 
AGTAATCAGA ATAGTGGCAT TAACTTGTAC ACCGAAAATG AGTCTAATTT CTGGGATGAA 
TTGAAAGAAT CATTAACCGC TTTCGTTGGC ACTGGGGAAG GTCGTTCAGT GATTGTTTCA 
CCTCAAGCAG GTTTAGTGAC AGTGCGTGCA TTACCACAAG AGCTTACCGC GGTTAAGAAG 
TTTATAACAG CTACTGAAAG TCATTTACAT CGCCAAGTCA TTATTGAAGC GAAGATAATG 
GAAGTGACTC TTAATGATGA TTTCCAACAG GGGATTAAGT GGAACAAAGT GCTTGATCAA 
GTCGGTAGTG CTGACATTAT TTACTCAACT ACAGGTAATG TTGTCGGTAA TGTTATTTCA 
AACACAATCG GTGGTGTTAA TAGTATAAAT TTTAGTAAAC AAACGAGTGG TAGCGATTTT 
TCAGGTGTTA TTGAACTTTT ACAAACACAA GGCAATGTTC AGGTACTTTC TAGTCCGCGT 
ATAACCGCCA CTAATAACCA AAAAGCGGTT ATTAAAGTAG GTGAAGATGA GTACTTTGTT 
ACTGAGGTTT CCAGCACTAC CACGACCGGT ACTTCAACAA CGACTACACC AGAGGTTGAA 
TTAACCCCAT TTTTCTCGGG TATTGCACTA GACGTCACAC CACAAATTAG TAAAGACGGC 
AGTGTTATTT TACATGTTCA TCCTTCAGTG ACTATTACTG AAGAACAAAG CAAAACTATT 
AAAATTGGTG ACACAACACT GGTATTGCCA CTAGCACAAA GTAGCGTTCG CGAATCAGAT 
ACCATTATCC GTGCTAACTC AGGGGAAGTT GTTGTTATTG GTGGCCTGAT TGAAACCTAT 
AACATTGATA TTGAATCTAA AACACCGATA TTAGGTGATA TCCCTTATCT TGGTGAGTTA 
TTTAAAAACA AGTCGCAAAA ATCGCAAAAA CGTGAATTAG TTATCATGCT AAAGCCCATT 
GTTGTTGGTC AAGATACTTG GAAAAACCAA TTACAAGATG CGCGCAGTTT GTTAACAAAA 
TGGTTTCCAG AAGAGGTTGA CGCGTGCGAG TTATCAAATG ACGGTACACT AACGCAAGAA 
TGTCAAGCGC AATGTGCTGA TGCAGAATAT GCAACAGAGC ATGGTGTTTG CCAAATGGCT 
GCACAAAATG CAGCTAGTAA TGATAATTAA 

 

Protein sequence

MIKTSPPMNK LKLNIALSAF FFALVGCQSM PNDPVDIKAD LDASIKETKR LNGPKALTQV 
PNSVQQELML NNMDQAKQGM LAEKRLEVSA TEVDAKDFFQ AIVRGSRYNV VIHPDVTGQI 
SLSLNNVTLS EALTVVEDVY GYEIIRRGNV VKVFPPGIRT ETIALNYLFL KRFGSSSTTI 
NSGGVSENDP NSGNSSNGNS SNSNNSNSGS NNNQSGNNGS SNQNSGINLY TENESNFWDE 
LKESLTAFVG TGEGRSVIVS PQAGLVTVRA LPQELTAVKK FITATESHLH RQVIIEAKIM 
EVTLNDDFQQ GIKWNKVLDQ VGSADIIYST TGNVVGNVIS NTIGGVNSIN FSKQTSGSDF 
SGVIELLQTQ GNVQVLSSPR ITATNNQKAV IKVGEDEYFV TEVSSTTTTG TSTTTTPEVE 
LTPFFSGIAL DVTPQISKDG SVILHVHPSV TITEEQSKTI KIGDTTLVLP LAQSSVRESD 
TIIRANSGEV VVIGGLIETY NIDIESKTPI LGDIPYLGEL FKNKSQKSQK RELVIMLKPI 
VVGQDTWKNQ LQDARSLLTK WFPEEVDACE LSNDGTLTQE CQAQCADAEY ATEHGVCQMA 
AQNAASNDN