| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4570 |
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| Symbol | mshB |
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| ID | 3522263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4823238 |
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| End bp | 4823927 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637287010 |
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| Product | MSHA pilin protein MshB |
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| Protein accession | YP_271218 |
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| Protein GI | 71281791 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.527275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATAAAAA TCATTTCCCA TAATAGGATT TCCCTAATTA GTCAGGAGCA GACAGCCGTT
CGTGTACTTA AGCAAAAGGG CTTTACCTTA ATTGAATTGG TTATTGTTGT AGTTATATTG
GGATTTTTAG CCGCAACCGC GATTCCTAAG TTTGTCGATT TAACTGAACA AGCTAAACAG
GCAAATATAG AAGGTATGGC AGGCGGTTTT GCTACAGGTG TGTCATTAGC ACGTTCTCAG
TGGGAGGTCG AAGCTCGCCC AAAAGATACT AGTGGTGTAA ATATGGTGAA TTATGACGGT
ACCGTTGTTT ATTTAACCAG TGAAGACAGA GATACATCGC CAACTATTAG CCCTGGTTAT
ATTGTCGGGA CTAATAGCGG TGCAGGAATA AATTCAAAGA CTATGGCTAT AGCTGATTGT
ATCTCTGTAT GGGATAGCTT ATTACAGCAA CCACCTCTTA TTGCTAGTAA TGTTACTGAA
ATTAATGATG ATGATGAGAG TTATAGGTAT TTGGCAAATG TTACGGGTAG TGGCGCAACT
ACCTTATGTC ATTACCACTT AAAAGAAACA TTAGCTCGCA ACAGTGATGG TAATTATATT
GCGCCATCAC CATTAACAGC TGTTGGTAAT AGTTTTAGTT ATCAGCCTGC TAATAGCTCG
GTAATTATTT ATATTAATGA TAAATCGTAA
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| Protein sequence | MIKIISHNRI SLISQEQTAV RVLKQKGFTL IELVIVVVIL GFLAATAIPK FVDLTEQAKQ
ANIEGMAGGF ATGVSLARSQ WEVEARPKDT SGVNMVNYDG TVVYLTSEDR DTSPTISPGY
IVGTNSGAGI NSKTMAIADC ISVWDSLLQQ PPLIASNVTE INDDDESYRY LANVTGSGAT
TLCHYHLKET LARNSDGNYI APSPLTAVGN SFSYQPANSS VIIYINDKS
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