| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4568 |
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| Symbol | |
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| ID | 3521161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4821963 |
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| End bp | 4822511 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637287008 |
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| Product | MSHA pilin protein MshC |
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| Protein accession | YP_271216 |
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| Protein GI | 71280692 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.116926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCTCAA AATGCAGTTG TAATTTAATT CATCAAGGGT TTACCTTGGT GGAGTTAGTC
ACTGTAATCC TACTCATTTC GATTCTAGCG GTATCAGTAG CGCCAAAATT TGGTGGCACT
GCCAGTTATG AAGCTCATAC GCACAGAGCG AAACTCATTT CAGCCCTACG GCTTACGCAA
CAACGAGCAA TGCAACAAAC AGATACTGCT GATGGTTACT GCCATCAATT AGTTTTTGAC
AATGATAGTC TTGTTTCGCG CTATGGGATC CCTGATAGAG TAGATTGCAC CGTTACTACA
TTTTCTGGAC AAATACCTGA GTGGCAGCCC GATGCGACTG GCTTTGAAGT TGAATTAAAG
TATCAAGTCA GCTTTGGTAT TCAGGGTAAA AATAATCCTA GTGCCATTAC TTTTGATAGT
ATGGGGCGAC CAGTTAGTAA TGCAACTCTT GCCAATAACT GTGTTGGAGG TTGCATTATT
AATATACAGA GCAGTGTTGA GACTTTGAGA ATTCAAATAG AGTCAGAAGG CTATATTCAT
GCTATTTAA
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| Protein sequence | MSSKCSCNLI HQGFTLVELV TVILLISILA VSVAPKFGGT ASYEAHTHRA KLISALRLTQ
QRAMQQTDTA DGYCHQLVFD NDSLVSRYGI PDRVDCTVTT FSGQIPEWQP DATGFEVELK
YQVSFGIQGK NNPSAITFDS MGRPVSNATL ANNCVGGCII NIQSSVETLR IQIESEGYIH
AI
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