Gene CPS_4543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_4543 
SymbolrpoN 
ID3522419 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp4794480 
End bp4795997 
Gene Length1518 bp 
Protein Length505 aa 
Translation table11 
GC content38% 
IMG OID637286983 
ProductRNA polymerase sigma-54 factor 
Protein accessionYP_271191 
Protein GI71281947 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCCTA CACTACAGCT CCGTATTGGA CAACACTTAA CAATGACTCC ACAATTGCAA 
CAAGCTATTA AGCTGTTGCA ATTGTCTACG TTAGAGTTAC AACAAGAAAT TCAAGAAGTT
TTAGAGAGCA ATCCATTACT TGAACTTGAT GAAAAAGCTC AAAGTGATAA TTCAAGTGAA
CAAAATAATC TTGAAGAAGC CTTTTCATCC AATACTAATG AAGAAAAAAC GGATCAACCT
GCGGGCGATG GTAGTGAAGA ACAGCAGGCC AGTATTGACG AAATCAGTAC TACTGAGGCG
ATGGAAAAAA GTGATATACC AGAAGAACTA AATATAGATA CTACTTGGGA AGAAAGCTAC
AGTGCTGGGG TATCAAATAC TGGCGCAGTA AGTAGCCCTG CTGATGACTA CACCTATCAG
GGTGAAACCA CTGATTCCAT TCAAGATCAT TTATTATGGC AAATGGAATT AACCCCTTTC
AGCGATACTG ATAAAACCAT CGCAATTGCT ATTATAGAAG CAGTCGATGA CGCCGGTTAT
TTAACTGTAT CACCAGAAGA TATCTTAGAG AGTGTTGGCA CTGAAGGGCT CGAGCTTGAT
GAAGTAGAAG CCGTATTAAA ACGTATTAAT ATGTTTGATC CTATTGGTGT CGCAGCTCGC
TCCATTCCTG ATTGCTTACT TATTCAATTA AATCAATTTA GTGCTGATAC CCCTTACCTG
AAAGAAAGTA AATTAATAAT CAACGACCAT ATCGATCTAC TTGGTAATCG AGACTATCGC
CAGTTAATGC GTAAAACCAA ATTAAAAGAA GATCAGCTAC GTGAAGTAAT GCGTTTAATT
CAAAGCTTGA ACCCTCGTCC GGGTGATGCG GTAATTAAAG GCGATGACCA GTATGTTATT
CCAGATGTTT CTGTTGAGAA AAAAAATGGC CGTTGGGTCG TTGAATTAAA TTCTGATACT
GCACCTAAAT TGTCGATTAA TAAACAGTAT GCGGCAATGT CTAAAACAAT GAAGTCGTCA
ACTGATGATG GACAATTTAT TAGATCCAAC TTACAAGAAG CTAAATGGTT TATTAAGAGT
TTAGAATCTC GCAATGACAC ACTACTTAAA GTGTCCAATT GTATTGTTCA ACGCCAGCAA
GGTTTTTTAG AACATGGTGC TGAAGCCATG AGACCTATGG TACTAAACGA TATAGCTGAA
GCTGTTGATA TGCACGAATC CACCATCTCA CGTGTTACAA CACAAAAGTA TATGCACACG
CCAAGAGGCA TCTTTGAACT CAAGTACTTC TTCTCTAGTC ATGTCAGTAC AGAGAATGGT
GGTGAATGTT CATCTACAGC AATTCGTTCT TTGATTAAAA AACTTATCTT AGCGGAAACA
CCTGCTAAAC CGTTAAGTGA TAGTAAAATG GCTAACTTAT TAGCTGAGCA GGGAATAAAA
GTGGCACGAC GTACAATTGC TAAATATCGA GAATCATTAG CGATACCACC GTCAAATCAA
CGTAAGAGTT TACTTTAG
 
Protein sequence
MRPTLQLRIG QHLTMTPQLQ QAIKLLQLST LELQQEIQEV LESNPLLELD EKAQSDNSSE 
QNNLEEAFSS NTNEEKTDQP AGDGSEEQQA SIDEISTTEA MEKSDIPEEL NIDTTWEESY
SAGVSNTGAV SSPADDYTYQ GETTDSIQDH LLWQMELTPF SDTDKTIAIA IIEAVDDAGY
LTVSPEDILE SVGTEGLELD EVEAVLKRIN MFDPIGVAAR SIPDCLLIQL NQFSADTPYL
KESKLIINDH IDLLGNRDYR QLMRKTKLKE DQLREVMRLI QSLNPRPGDA VIKGDDQYVI
PDVSVEKKNG RWVVELNSDT APKLSINKQY AAMSKTMKSS TDDGQFIRSN LQEAKWFIKS
LESRNDTLLK VSNCIVQRQQ GFLEHGAEAM RPMVLNDIAE AVDMHESTIS RVTTQKYMHT
PRGIFELKYF FSSHVSTENG GECSSTAIRS LIKKLILAET PAKPLSDSKM ANLLAEQGIK
VARRTIAKYR ESLAIPPSNQ RKSLL