| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4539 |
|---|
| Symbol | |
|---|
| ID | 3521465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4791921 |
|---|
| End bp | 4792466 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286979 |
|---|
| Product | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
|---|
| Protein accession | YP_271187 |
|---|
| Protein GI | 71280996 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1778] Low specificity phosphatase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCC TATATGGCAA TGTAGAACAC AACGTTTTAG CTAAAGCGCA ACAAATAAAG
TTACTGGTAT GTGATGTCGA TGGTGTATTT TCTGATGGCA GAATTTATTT AGGCAATGAT
GGTGAAGAGC TAAAAGCTTT TCATACAAAA GATGGTTTTG GCATTAAGGC CTTAGGTGCT
AGTGGCGTTG ATGTTGCGAT TATTACGGGA AGAACTTCAG CTATCGTTGA GTATCGTATG
AAAGCATTAA ATGTTGCACA TATTATTCAA GGCCAAGAAG ATAAGTTACC TGCATTAATT
GATTTAATTG AACAATTAAA CATTACTATT GAAGAGGTAG CGTACATTGG TGATGATGTA
CCTGATTTAC CTTGTATTGA AGCCGTTGGC TTAGGCATTA GTGTTTCCGA TGGACATCCT
TTAGTTCTTC GTTCTGCCAA TTATACCACT TTTACTCGTG GTGGATTTGG CGCGGTAAGA
GAGACATGTG ATTTGATCAT GCAAAGCCAA AATAGCTTAG ACAAAGCATC AGGCGCCAGT
ATATGA
|
|---|
| Protein sequence | MNTLYGNVEH NVLAKAQQIK LLVCDVDGVF SDGRIYLGND GEELKAFHTK DGFGIKALGA
SGVDVAIITG RTSAIVEYRM KALNVAHIIQ GQEDKLPALI DLIEQLNITI EEVAYIGDDV
PDLPCIEAVG LGISVSDGHP LVLRSANYTT FTRGGFGAVR ETCDLIMQSQ NSLDKASGAS
I
|
|---|
| |