| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4525 |
|---|
| Symbol | pdxA |
|---|
| ID | 3522445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4778423 |
|---|
| End bp | 4779403 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637286965 |
|---|
| Product | pyridoxal phosphate biosynthetic protein PdxA |
|---|
| Protein accession | YP_271173 |
|---|
| Protein GI | 71281973 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAC GCATTGCCAT TACCCCCGGA GAACCTGCTG GTGTTGGTCC CGACTTAATA
ATTACTATCG CTCAGCAAGA TTGGCCTGTT GAAATGGTTG TCATTGCTTC AAAAGCATTA
TTACAAGAAA GATCAAAAGC GCTTTCTTTA CCGCTAACCA TAATCGATTA TGATCAACAT
GCTCCAGCGA AATCTCAAAA ATCAGGCAGT TTAACAGTAC TTGATGTTGA GCTAACTGAA
CCTTGCGTAC CCGGAACACT AAATAGTGCA AATGGCTCAT ACGTGGTAGA AACGTTAAGA
ATTGCCAGTG AAAAAAATAT ATCTGGTGAA TTTGATGCAA TCGTTACCGG TCCTGTTCAC
AAAGGACTAA TAAATAAAGC GGGTATTGCA TTTAGTGGAC ACACCGAATA CTTTGCAACT
CAAGCCAACT GCAGTGATGT TGTAATGATG CTTGCGACTA AAGGCCTTCG AGTCGCATTA
GTTACAACAC ATATACCATT AGCCTATGTA TCTAAAGCAA TTACCTATGA ACGCTTGCAG
AAAGTCACTA GAATTTTACA TAAAGACTTG CAAGAAAAAT TTGGTATCAA ATCACCTAAA
ATATATGCTT GTGGTATTAA CCCTCATGCG GGTGAGGATG GCCATCTTGG CCGTGAAGAA
ATAGAAATCA TGGAACCAGC TTTTGCTGAA CTTCGCGCTG ATGGCATAGA TATTATTGGT
CCTTTACCAG CCGATACCAT TTTTCAAGAA AAGTACTTGG CTGAAGCGGA TGCGATTTTA
GCTATGTATC ACGACCAAGG TCTTCCTGTG CTGAAGTACA AAGGCTTTGG CTCTTCAGTA
AATATAACGC TAGGTTTACC GTTTATCCGT ACTTCCGTTG ATCACGGGAC AGCGCTTGAA
CTTGCAGGTA AAGGTACCGC AGACTCAGGC AGTTTTATTG AAGCAATGAA CAACGCCATC
AACTTAGCTA GTAACAAATA G
|
|---|
| Protein sequence | MTQRIAITPG EPAGVGPDLI ITIAQQDWPV EMVVIASKAL LQERSKALSL PLTIIDYDQH
APAKSQKSGS LTVLDVELTE PCVPGTLNSA NGSYVVETLR IASEKNISGE FDAIVTGPVH
KGLINKAGIA FSGHTEYFAT QANCSDVVMM LATKGLRVAL VTTHIPLAYV SKAITYERLQ
KVTRILHKDL QEKFGIKSPK IYACGINPHA GEDGHLGREE IEIMEPAFAE LRADGIDIIG
PLPADTIFQE KYLAEADAIL AMYHDQGLPV LKYKGFGSSV NITLGLPFIR TSVDHGTALE
LAGKGTADSG SFIEAMNNAI NLASNK
|
|---|
| |