| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4516 |
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| Symbol | |
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| ID | 3520813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4763127 |
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| End bp | 4766540 |
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| Gene Length | 3414 bp |
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| Protein Length | 1137 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637286956 |
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| Product | sensory box sensor histidine kinase/response regulator |
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| Protein accession | YP_271164 |
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| Protein GI | 71280347 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTATTTCC AAGCAGGTAT AAATACAGTT TTTAGGCGTT ATAATATCAC CGTTGTAGTT
GCCTTTATTG TCATTATTCT TATTGCCTTC TCTGCCGCCT CAGTACGTTA TTTCAATCAA
ATTTCACAGC ATAAAAAGCA AAGTTTGCTT GAGCTCCAGC AAGAAGCGCA ACAGTTAAAT
TTTATGCTAG AGCAAAGTGT GCAAGCGGTA GTTGGCATAC AAGAACTTGC CGAATATATT
CTGAAGCATC CCAATGAAAT AAACATTCCC ATGCCTTCCT TGTTACAACA AGAAAACCTG
TTTTATTTAA ATAAGCCTCA GCATGATGTT ATTAAACAGG GTAAACGCTT GAGTAGTAAT
ATTACAGGTA TAGGACAAAT AAGTAAGTTT GGAGAGCTTA AAAAACAAGA AATTGCCATG
GCTAATGCAC TAACCCCTGC ATTCATTGCT TCGCAAAATA TCCTCAAAGA AGCTACATGG
TTTTATTATA TTTCTTTGGA TAATTTTGTG AATATATACC CTTGGGTTGA TCGCGAAATA
TGGCAGTTTA GTGAAAAAGC CCTCGATAGC CAACATAATA AAGCTATGCG AGTATTAACT
GCAAAAAACA ATCATGTTAT CTGGTCTCCA CCATATCTAG ATGCCGCGGG CGGCGGTATG
AACGCTTCAT TAGGCACAGG TGTTTTTCAT CAGGACAAGT TGTTAGGCTC AGTAGTTATT
GATATCAATT TATCGCGTTT ACATGCCAGT TTGCCTGAAT TAGAATCAAA CAATCAAGGC
TTTGTTTTAT ATAATGAAAA TAATGATGTT TTACTTTCAA AACGTCTGGG GAAAGAGTCG
TTAAGCTACC GTGCTTCTTG GCAAGATCTG TTACCTGAAT CACTTCAATA CCTTAGTGCT
AAGCATTTAG CTACAATGGG AGATACCGAG CGCTTAGGTG ATTGGTTTAT TGAAAAGCAG
CAGCTCACCG CTAATGGTTG GACCTTACTT AAATATCAAC AATATGAGGA TTTTTCAGCG
CCTCAGTATA GTGATTTTAT TTTTGTTTTT GCGATGCTAT TCATTGGCTT ATTCGCATTT
TTGATGTTAG TTAATACCAT GACAAAGCGT ACCTTTATTA AGCCAACTAC TGAATTTATA
AGTCATATTG AATATTGCGC TCAAGGAGAC CCTGGCAAAG TTACCCCAGC AGCGGATTGG
TTGCATTGGT TTCAAGTGGT TGAAGATATA TTTGCTCAGA ACCGTAGTTT ATTATTACAA
CTAACCGAGC AAAATGATGT ATTAGATAGC CGTGTCATTG AAAAGACTAA AGCGCTACAA
GAAACAAGTA CTAAGCACCA ACGTGATTAC GCCCTATTGC GCTCGGTGAT GAATGCCATC
CCTGAATTGA TCGTCTTTAA TGATCCTGAT GGTTCATTAA TGGGGTGTAA CAAGGCTTTT
GAGCGCTTGG CTAATCATTC TGTAGAACAA ATGTTAGGAA GTAACTCAGC CAGTTTTATG
CCGGTTCCTT TGGCAGAAGA AATTAAAATT TTAAATGCTC TGAATAATAA TGTTTACCCT
CAGCAAGCTT TAATTAAAGC TGGGGAGTTT ATCTATCAAG GTTTTTGTAA TCAGTTTACC
GATGAACAAG GTAATATTCT CGGCACTATC AGTATTTTTC ATGACGTAAC GTCACAGCAG
GCAACACAAT CAGCATTGGT AAAAGCAAGA GATCAAGCTG AGTATGCTAA CCGAGTGAAG
ATTCAGTTTC TGGCAAATAT GAGCCATGAA GTTAGAACAC CAATCAATGC TATGCAGGGC
ATGATGGACT TATTAGCTCA TACTTCCCTA GATACCCGTC AGCTACATTA TTTAGTAAAT
GCGCAAAGTG CCTCATCAAC CTTGCTTCAT CTTGTTGATG AACTGTTGGA CTTATCTAAA
ATAGAAGCGG GTAAAATGAT TGTCAGCCAA GATGCAGTCA ACCTGCCAAT CATTATTAAT
AAGGCGTTAA AACTCAATAT CACCAATGTC GATCATCAAC GCGTCAAGAT CATTGTTGAT
ATGAGTGCAG ATGTGCCTAG CAATGTAATT AGTGATGAAA TGCGTCTAGT GCAAGTGCTA
GCTAATTTAT TTAATAATGC TATCAAGTTT ACTGAACAAG GCCAGATTAA ATTAACTATT
GATGTGCTTT CTATAGACGA TACCGTAGCT AAATTACGCT TTCGAATGAG CGATACTGGT
ATCGGTATTG CTAGTAATAA TCAAAGTCAT TTGTTTAATG CCTTTAGTCA AGCCGATGAA
TCAATGACTC GTAAATACGG TGGGTCAGGC TTAGGTCTAT CTATTTGCCA GCAAATCATT
AAGCTACTCG GCGGTAAGAT AAAACTGACA AGCCAATTAG GTCAAGGCAG TGAGCTTAGC
TTTGTATTAC CCTTTCAAAT AGTTCAACTC GATACATTGG CGCAGCAAGA CTCAGCGAGA
GCTAATAATA CCGCTCAAAA AGTTACTGAA GAGTTTATGA CTACTTTACC TGCAGAGCTA
AGTCAGCCGC TATTATCGGA TATTACTATT TATGCGGTTG ATCAAACACT CTCAGCTAGC
TTTACTCAAA GTATTGCTAA AATGAACTGG CTGTTGCATG GCGTTAATAG TGTTGAAGCG
TTATGTCAGT TAGATATTGC GGATAATAGT ATCTTACTGA TCGGTGAAGC AGACTTTGTT
AAGCAACAAA GGGAACAAGA GTTAATAGCA CCTTTAAATG AGTTTAGATT ACTCTGTTTG
TGTCAGCCGG CATTAACTCA ATTGAATAAC AATACTTGTA ACTATTTAGA TCAACTGTCT
GTGCCTTATC TATTAGTTGA CATGCCTTTG TTCCGTTATG CGCTTGATCA AATATCACAA
GCACTATTTT ATAAAGTCGA GCATTCAGCA CAACAGGATA AAAATTTAAG CGTGATCGCT
GAATATTCTC AGGGTTCTCA AGGGATAATA TCTAAAAAAA CAGAAACCAC TAATAGGCAA
GAATGTGCAA TTACTCATGA TAAGCACAAT CTAAAAGAAG TGTCAGTTTT ATTGGTGGAA
GACAATTTAG TTAACCAACT AGTCGCTAAA GAGTTGTTAT TGAACATGCA GGCTAAAGTG
ACGATAGCTG ATAATGGTCA AGAGGCTTTA GATCTGTTAG CAGAGCAAGA TTTTGATGTG
GTGTTAATGG ATATTCAAAT GCCGATTATG GATGGACTCA CCGCAGCTAA ACATATTAGA
GCGCAAAGTA ACTATCAATA CCTACCCATC ATTGCTATGA CAGCTCATGC CCGAGAAGAA
GATAAACAGC TAAGTCTAGC GGCGGGAATG AACTTGCATA TGCCTAAGCC TGTTACAGGA
CAAGCGTTAC TAAGCAGTAT AAAGAAAGTT CTAACTAACC TAAGCGCTGT TTAA
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| Protein sequence | MYFQAGINTV FRRYNITVVV AFIVIILIAF SAASVRYFNQ ISQHKKQSLL ELQQEAQQLN
FMLEQSVQAV VGIQELAEYI LKHPNEINIP MPSLLQQENL FYLNKPQHDV IKQGKRLSSN
ITGIGQISKF GELKKQEIAM ANALTPAFIA SQNILKEATW FYYISLDNFV NIYPWVDREI
WQFSEKALDS QHNKAMRVLT AKNNHVIWSP PYLDAAGGGM NASLGTGVFH QDKLLGSVVI
DINLSRLHAS LPELESNNQG FVLYNENNDV LLSKRLGKES LSYRASWQDL LPESLQYLSA
KHLATMGDTE RLGDWFIEKQ QLTANGWTLL KYQQYEDFSA PQYSDFIFVF AMLFIGLFAF
LMLVNTMTKR TFIKPTTEFI SHIEYCAQGD PGKVTPAADW LHWFQVVEDI FAQNRSLLLQ
LTEQNDVLDS RVIEKTKALQ ETSTKHQRDY ALLRSVMNAI PELIVFNDPD GSLMGCNKAF
ERLANHSVEQ MLGSNSASFM PVPLAEEIKI LNALNNNVYP QQALIKAGEF IYQGFCNQFT
DEQGNILGTI SIFHDVTSQQ ATQSALVKAR DQAEYANRVK IQFLANMSHE VRTPINAMQG
MMDLLAHTSL DTRQLHYLVN AQSASSTLLH LVDELLDLSK IEAGKMIVSQ DAVNLPIIIN
KALKLNITNV DHQRVKIIVD MSADVPSNVI SDEMRLVQVL ANLFNNAIKF TEQGQIKLTI
DVLSIDDTVA KLRFRMSDTG IGIASNNQSH LFNAFSQADE SMTRKYGGSG LGLSICQQII
KLLGGKIKLT SQLGQGSELS FVLPFQIVQL DTLAQQDSAR ANNTAQKVTE EFMTTLPAEL
SQPLLSDITI YAVDQTLSAS FTQSIAKMNW LLHGVNSVEA LCQLDIADNS ILLIGEADFV
KQQREQELIA PLNEFRLLCL CQPALTQLNN NTCNYLDQLS VPYLLVDMPL FRYALDQISQ
ALFYKVEHSA QQDKNLSVIA EYSQGSQGII SKKTETTNRQ ECAITHDKHN LKEVSVLLVE
DNLVNQLVAK ELLLNMQAKV TIADNGQEAL DLLAEQDFDV VLMDIQMPIM DGLTAAKHIR
AQSNYQYLPI IAMTAHAREE DKQLSLAAGM NLHMPKPVTG QALLSSIKKV LTNLSAV
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