| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4447 |
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| Symbol | pilB |
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| ID | 3522068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4683825 |
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| End bp | 4685525 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637286887 |
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| Product | type IV pilus biogenesis protein PilB |
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| Protein accession | YP_271095 |
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| Protein GI | 71281596 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGGAA ATCACCAACA AGCTAGTCTG CTATCGGCAT TATCAAAGCA GAACCTTATT
CCTTTAGAAT CAATAGATGA TATTACGGCT GATTTCATCG GTAAAAAAAT ACCTTTCATT
CGTTTTTTGA TTGAAGACAA AAGTATTGAT GGAAATAGTA TTGCTAAAGT ACTTTCTAAA
AGCTTTGGCC ACCCACTAAT TCAACTTAGT AACTTCGATA CCAGCTTGGT ACCTGAAGGT
GTTCGTAATG AAAAACTGAT CACTAAACAT AATGCATTGC CACTATATTT ACGTGGCAAA
GTACTGTTTA TTGCCATGTC AGACCCGACT AATTTAGATG CCTTAGAAGA AATACAGTTT
AATACCGGTT ACAGCACTGA GCTAGTATTA TGTGATGAGA AGAGCTTACA AACTTGTATT
GAAAAAGTAC TCGAAGATGA AAGTGCTGCA TTAGATATAA GTGACATCGA TGCAGATGAG
TTAGCGGGTA TTGATGTTGA AGAGTCAAGA AAAGAAGACG CTAACGCTAA CGGTGAAGAT
GATGCACCTA TCGTTGTTTT CATCAATAAA ATATTACTCG ATGCTATAAA GAAAGGGGCT
TCAGATTTAC ATTTTGAACC TTATGAAAAG TCATTTCGTA TTCGCTTTCG TATTGATGGT
ATTTTATCTG AAATAGCTAG ACCACCAGTA AGCCTCTCTT CAAGAATGGC AGCCCGCTTG
AAAGTGATGT CTAAATTGGA TATTGCCGAA CGTCGTGTTC CACAAGATGG TCGAATTAAG
TTGGCACTAT CCAAGAAAAA GTCGATCGAT TTTCGTGTCA GTACTTTACC CACCATGTGG
GGTGAAAAAG TCGTAATGCG CATATTAGAT TCATCAAGTG CTATGCTGGG TATAGATATG
CTGGGTTATG AACCCGCTCA GAAAAAAATA TACATGGAAG CATTAGAACA ACCGCAAGGT
ATGATTTTAG TTACTGGACC AACAGGTTCA GGTAAAACGG TATCGCTTTA TACCGGATTA
AATATATTAA ACACACAAGA ACGTAATATA TCTACAGCGG AAGACCCTGT CGAAATTAAC
CTTGAAGGCA TCAACCAAGT ACAAATCAAT AATCGTGCCG GTTTAACTTT CCCAAGTGCA
TTGCGCTCGT TTTTACGACA AGATCCAGAT ATTGTCATGG TGGGGGAAAT TCGGGATTTA
GAAACCGCTG AAATTTCGAT AAAAGCCGCA CAAACTGGCC ACTTAGTATT ATCAACCCTG
CATACTAACT CTGCTGCTGA AACGCTTACT CGTTTACTTA ATATGGGGGT TCCTTCCTAT
AATGTTGCCA GCTCTGTCTC TATTATTATT GCTCAACGTT TGGCAAGACG ATTATGCCCG
CAGTGTAAGG AGGAAGAGCC TCTTTCTGAA ATGCTATTAG CCGAACAAGG TTTTCCTGCT
GATAAATTAG CTGACATAAA GTTATTTAAA CCTATAGGCT GTACTCATTG CACTGGAGGC
TATAAAGGCC GCGTGGGTAT TTACGAAGTG ATTAAAATTA GCCCGACTAT TGCTTCTATT
ATCATGGAAG GTGGCAACTC TCTTGATATA GCGAAGCAAT GCCAAAAGGA GGGGTATAAC
AACTTGCGTC AATCAGGTTT ATTAAAAGCA ATGAGCGGTA TGACAAGTTT AGAAGAAATT
AACCGAGTAA CTAGCGCTTA A
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| Protein sequence | MKGNHQQASL LSALSKQNLI PLESIDDITA DFIGKKIPFI RFLIEDKSID GNSIAKVLSK
SFGHPLIQLS NFDTSLVPEG VRNEKLITKH NALPLYLRGK VLFIAMSDPT NLDALEEIQF
NTGYSTELVL CDEKSLQTCI EKVLEDESAA LDISDIDADE LAGIDVEESR KEDANANGED
DAPIVVFINK ILLDAIKKGA SDLHFEPYEK SFRIRFRIDG ILSEIARPPV SLSSRMAARL
KVMSKLDIAE RRVPQDGRIK LALSKKKSID FRVSTLPTMW GEKVVMRILD SSSAMLGIDM
LGYEPAQKKI YMEALEQPQG MILVTGPTGS GKTVSLYTGL NILNTQERNI STAEDPVEIN
LEGINQVQIN NRAGLTFPSA LRSFLRQDPD IVMVGEIRDL ETAEISIKAA QTGHLVLSTL
HTNSAAETLT RLLNMGVPSY NVASSVSIII AQRLARRLCP QCKEEEPLSE MLLAEQGFPA
DKLADIKLFK PIGCTHCTGG YKGRVGIYEV IKISPTIASI IMEGGNSLDI AKQCQKEGYN
NLRQSGLLKA MSGMTSLEEI NRVTSA
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