| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4411 |
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| Symbol | |
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| ID | 3522758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4647336 |
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| End bp | 4649831 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637286852 |
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| Product | GAF domain/GGDEF domain/EAL domain-containing protein |
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| Protein accession | YP_271060 |
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| Protein GI | 71282285 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.523822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAAGCTC GTTATACCGC ACTCTTTAAA TTAAACCAGC TATCTCAAGA ATGTAATGAT
CTTGATAGCT TTTATCCGCA AGTACATACC ACTATCGCGT CGTTAATGAC CGCGAAAAAC
TTCTTCATCG TGCTCTATGA CCAAACGTTT GAAACCTTAG AGTTCGTTTA TTATCTTGAT
GAGAAAGATG AAAAACCGTC AGGCATCATA GATTACCAAG ATTATGATGG TTCATTTACT
AATTTAGTTA TTGAATCAAA ACAACCACTT CTCTTAACCC CTGAATTAGA AAAACAGTTA
TTTGATAATT ATAAAATCAA ACAGTTTGGT GTCCGCGGCA CTGACTGGCT GGGTGTGCCT
TTACTCCAAA ATGGTTTAGT GATTGGTACC ATAACTATAC AAAGTTATGA TGAAAAAATT
CGATATAATG AAAGTGACTT AAATTTACTT ACCTTTGCCG CCCAGCATAT TGTTGGTGCT
ATGGTACGTT TACAAGATCA GCAACGCTTG AAAAATGCGG TTAATGCACG TACCAAAGAA
TTGATGGCTC AAATTCGTGA GCGAGAAAAA TCTGAGTTAC TACAAGAATC GTTATATCGA
ATATCGGAAT TAACCACGGA TATTGAACTC GATATAGATA CTTTTTATAG TAAAGTTCAC
AATATTATCG GACAGCTGAT CAATGCTAAG AACTTCTTTA TTGCTAAATA TGAAAAAGAT
TCAGACACGT TAAGCTTTTC TTATTATGTG GATGAAAAAA CATCTAATTT AGCTAAAGAC
TTTAAACCAA GAAAACTCTC AAATCGATAT TCCGAACTAG TGCTTCGCCG AAGAGAGACA
GTATTACTTA CTTATCAAGA AATGATGAGT CTACATCTTG AAGGTGAAAC TAAAAAACCA
CAGGATGATA TCCATTCTTG GTTAGGCGTA CCATTAATCT ATTCAGGTCA GTTACTTGGG
GTCATGGTTT TACAGAGTTA TTATTATAAA ACCACCTACA ACCAACAAGA TGCCGAATTA
CTTAACTTTG TCTCGAACCA TGTCTCAGCA GCCATTAAAC GTCGAGAACT CGCTGATTTT
GAAAGGCGCA GTCATGAGTT ATTAGAGCAA CAAGTTAAAC TACGCACACT TGCCCTTGAA
GATGAAATTA CCCATCGTAA ACAAGCTGAA AAATTATTAA AACACACCGC CGCCCATGAT
AGTTTGACCG GGTTACCCAA CAGAATGGTA TTCCTTGATT TACTTAATCA TGCGATAGCT
TGTGCAAAAC GAAAAGATGA CTTTTCTTTT GCTGTGCTGT TTTTAGACTT AGATCGTTTC
AAAGTAGTTA ACGATAGTTT AGGACATCAT GCGGGTGATG TATTATTGAA AATAATAGCG
CGAGAATTAT TGGCTATTGT TCGTAAAGTA GATACCGTTG CTCGCTTAGG TGGCGATGAG
TTTGTCATTT TAATTGAAGA CTTGAAAAGT AACAATGAAG CCTTTGAAGT AGCGCAGCGC
ATCACGGCTT TTCTTCAACA ACCTTTTACT ATCGATAATC AATTAGTATA CACAGGCACT
AGTATTGGCA TATCGTTTAG CAATATACGA TATACTGATG CTGATACTAT GCTCAGAGAT
GCTGATACTG CTATGTACCA TGCTAAAGAC AATGGTAGAG GGCGCTATGA AGTCTTTGAC
GACAGTATGC ATCAGAAAGT ACAGAATGCT TTAAGCCTTG AAGCGGATAT TCGAGAAGCG
ATTACTTGGC AAGAGTTCAT CCCTTATTTC CAACCAATTA TTAAACTGGA TAACCAAAAA
CTTAAAGGTT TTGAAGCGCT AGCTCGCTGG CAAAGTACTA AGCGTGGTTT TGTTTACCCT
AATGATTTCA TTCCGCTGGC TGAAGAAACT GATTTAATTA AAGAAATTGA TATTCAGATT
ATTGAAAAAT CTTGTCAGCA GTTGAAGTGT TGGCATGATG AATTAGGCTG TGATGATCTT
TATGTCAGTT GTAATTTATT TTCCAAGCAA TTTTTTAGTA CTAGCTTACC GCAAGATATT
GAAAAAGTAT TAAAAAGAAC AGGTTTAGCT CCCCATCATC TTCGCGTTGA ATTAACTGAA
CGTGCTTTGT TGGAAAATGC TGAGATAGTT TTGACTAATA TGCAAGCCTT GAAAAATATG
GGGGTAAAAA TATTACTCGA TGATTTTGGC ACCGGTTATT CAAGCTTGGG CTATTTGCAT
CGTTTTCCGA TTGATGTGCT GAAAATAGAT CGCTCCTTTA TTAGTAATGT TGATGAGCAT
AATAATAACC GAGCCATAAT TAGAACCATT GTTGATTTGG CTAATAATCT ACAAATGTCT
ACCGTGGGAG AAGGCATTGA AAGTTTAGCT GATGCCGAGT TACTACAACA GATGGACTGT
GTGTACGGAC AAGGTTACTA CTTTGCCAAA CCTATGTCGT CTCAAGATAC AAAGGATTAT
ATTATTCAAA AATTATATTA TTCATCAAGT GAGTAA
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| Protein sequence | MQARYTALFK LNQLSQECND LDSFYPQVHT TIASLMTAKN FFIVLYDQTF ETLEFVYYLD
EKDEKPSGII DYQDYDGSFT NLVIESKQPL LLTPELEKQL FDNYKIKQFG VRGTDWLGVP
LLQNGLVIGT ITIQSYDEKI RYNESDLNLL TFAAQHIVGA MVRLQDQQRL KNAVNARTKE
LMAQIREREK SELLQESLYR ISELTTDIEL DIDTFYSKVH NIIGQLINAK NFFIAKYEKD
SDTLSFSYYV DEKTSNLAKD FKPRKLSNRY SELVLRRRET VLLTYQEMMS LHLEGETKKP
QDDIHSWLGV PLIYSGQLLG VMVLQSYYYK TTYNQQDAEL LNFVSNHVSA AIKRRELADF
ERRSHELLEQ QVKLRTLALE DEITHRKQAE KLLKHTAAHD SLTGLPNRMV FLDLLNHAIA
CAKRKDDFSF AVLFLDLDRF KVVNDSLGHH AGDVLLKIIA RELLAIVRKV DTVARLGGDE
FVILIEDLKS NNEAFEVAQR ITAFLQQPFT IDNQLVYTGT SIGISFSNIR YTDADTMLRD
ADTAMYHAKD NGRGRYEVFD DSMHQKVQNA LSLEADIREA ITWQEFIPYF QPIIKLDNQK
LKGFEALARW QSTKRGFVYP NDFIPLAEET DLIKEIDIQI IEKSCQQLKC WHDELGCDDL
YVSCNLFSKQ FFSTSLPQDI EKVLKRTGLA PHHLRVELTE RALLENAEIV LTNMQALKNM
GVKILLDDFG TGYSSLGYLH RFPIDVLKID RSFISNVDEH NNNRAIIRTI VDLANNLQMS
TVGEGIESLA DAELLQQMDC VYGQGYYFAK PMSSQDTKDY IIQKLYYSSS E
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