Gene CPS_4410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_4410 
SymbolputA 
ID3522073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp4643263 
End bp4647090 
Gene Length3828 bp 
Protein Length1275 aa 
Translation table11 
GC content40% 
IMG OID637286851 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_271059 
Protein GI71281601 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTATTTA CTGGTTCATT GATTACTGAT TGTCCAATAA GACAAAAAAT TCGTGAGTTT 
TATCGAATTG ACGAAAATGT TGCCGTTGAT CATATTTTAC CTGCTGCAGA AGTAAATGTT
AGCGCAAGAA GCCGTGCGTG GGAACGCGCA CGTAAAATGG TTTTAAAAAT TCGTCAAGAC
CAAGAAGGTA ATGGTGCAAT TGATTCGCTA CTCAATGAAT ACTCACTTTC TTCAGAGGAA
GGCGTGGTAT TAATGTGTTT GGCCGAAGCG TTATTACGTG TACCAGATAA ACATACTCAA
GATGAGCTTA TTCGCGATAA AATTTCTCAA GGTCAGTGGA GTTCCCATTT AGGTGCCAGT
GACTCATTAT TTGTTAATGC TTCATCATGG GGTTTATTGC TTACAGGCTC TATGGTTAAT
TACGCTGATA AGCGTAAAAA AGAACAATTT GGTTTACTAA AGAAAACTGT TGGTCGTTTA
GGTGAGCCTG TTATTCGTAA ATCAATGAAC TATGCCATGA AAGTAATGGG TAAACAGTTT
GTTATGGGCG AAACCATTAA AGCTGCTACC GAACGTGCAG CGACGAAAGA ACAGCAAGGT
TATGTTTATT CATACGATAT GCTTGGTGAA GGTGCCCGTA CTATGGCTGA TGCCAATATG
TACCTAAAAG CCTATCAAGA TGCTATTAAT GCTATTGGTG AAGTTGCTGT TGCTTCAGGT
AAGAACGATC CGCGTAAAGT ACCTGGCATT TCAATTAAAC TTTCTGCTAT TCATCCTCGT
TATGAGTTTT CTCATAAAGA ACGGGTAATG ACTGAAATAG TGCCTAAGTT AAAGGCATTA
TGTTTACAAG CTAAGCAATA CAATATTGGT TTAACGGTTG ATGCGGAAGA ATCAGAGCGT
TTAGATATCT CATTGGATAT CATTGAAGCG GTATTTTCTG ATAGTGAGCT TGGTGATTGG
CAAGGCTTTG GTATAGCACT GCAAGCTTAC CAAAAACGTG CTATTCATGT TGTTGATTGG
TTGCGTGACT TAACGTTGCG TACTGAACGA AAAATGATGG TGCGTCTTGT TAAAGGTGCT
TATTGGGATA CTGAAATTAA GAATGCTCAA AAAGATGGCT TGAATCATTT TCCTGTGTTT
ACCCGTAAGT CATCTACCGA TGTTTCTTAC CATGCTTGTG CCAATAAATT ATTAGAATAT
CGCGATACTA TCTATCCACA ATTTGCCACG CATAATGCTT ATACTGCAGC AACCATAGTT
GAATTAGCTG GCGATGATAA AGCTGGTTTT GAGTTCCAAT GTTTACATGG CATGGGGGAC
TCTTTGTACG ACCAAATTGT TAAAGAAGAA AGTATTCAAT GTCGAATCTA TGCGCCAGTA
GGTCATCATG AAGACTTACT GGCTTATTTG GTACGTCGTT TATTAGAAAA TGGTGCTAAC
TCATCGTTTG TTAATGCTAT TGTTGATGAA GATCAACCAG TTGAATCATT ATTGGAAGAT
CCAGTAGAAA AAACTCAACG CCTTAAAGCT AAATACAATA ACCAAATAAT TATGCCTATT
GACCTCTATC GAGGTGAAGG TGAGAAAGGC CGAGATAATT CAAAAGGTCT AGATCTAACG
GATATTAATG AAATCATTCC GCTAAAAGCC GCTTTAGATA ATTGGTTTGT TGACCATTTA
TTGAATAAAA ATGAAGTGCC TGATGGCGCC AATGCCGTAA TGAACCCGGC GAACCGTAGT
GAAATTATCG GCTTCCATCA ACATGCAAGC CATGGTGATA TGTTACTGAT GATTGATAAG
GCCGAAACAG CCTTTAGCAC TTGGTCAAAA ACGCCTGCAG TAGATCGCGC CGCCTTGCTT
TGTCGCATTG GTGATATTTT AGAGCGCCAT ATTGATGAGC TCATTGCAAT GTGTATCAAA
GAAGCGGGTA AGGTCGCGCA AGATGGCATT GATGAAGTGC GCGAAGCTGT TGATTTTTGT
CGTTACTACG CCGCTCGCGC TATTGAGTTA AGCAGTGATG AAAGATTAGA AGCACGTGGT
GTAGTGTTAT GTATCAGTCC GTGGAACTTT CCTTTGGCTA TTTTCTTAGG CCAAGTTGCT
GCTGCAATTG CCACGGGTAA TACTGTTTTA GCAAAACCCG CGGAACAAAC AGGTTTAATT
GCGCTTCGTG CTATTGAATT GATGAAGTCA GTTGGTTTGC CTGAAAACGT AGTACAGGCT
GTTATTGCGC GCGGTAGTGC CGTAGGTAAC ACTATTATTC CAGATAGCCG TATTCAAACA
GTCATGTTTA CTGGCTCTAC AGAAACTGGC ACACGTATTT CACAAACGTT ATCAGACCGT
GGTGGTGATC AAGTACCGCT AATTGCTGAA ACGGGTGGTC AAAATTGCAT GATTGTTGAC
TCAACGGCAT TACCTGAACA AGTTGTTGAT GATGTTATCT CATCAGGTTT CCAGAGTGCA
GGTCAACGTT GTTCAGCGTT ACGCGTACTC TTTTTACAGG AAGATATTGC AGATAATGTT
ATTACCATGC TTCAAGGTGC ATTGGCGGAG TTACATATTG GCAATCCTGC AAAATTAAGT
ACTGATATTG GCCCAGTTAT TGACCAAAAA GCCCTAGATG CGCTAAATGC TCACGCCGAA
TATATGAAAT CACATGGCAA GTTACTTTAC CAATGTGAGT TCTCTGAAGA TGTTGTAGAT
GAAGATGGTC ACTTTTTCTT TGCACCACGC TTGTATGAAA TTGATGATAT TAGCGTGTTA
AAGCAAGAAG TCTTTGGTCC TTGTGTTCAT ATTGTTCGCT TTAAAGGTAA TGAAATAGAA
AGTGTTGTGG ATAAAATCAA TGGCACTGGT TTTGGCTTAA CTATGGGTAT TCATACGCGT
ATTGAGCATA GAGCTATTAA TTTAGCCAAA TTATCACGTG CGGGTAATAT TTATATAAAC
CGTAACATGA TTGGCGCGAT TGTTGGTGTA CAACCATTTG GTGGTCGAGG CCTTTCTGGT
ACAGGCCCTA AAGCGGGTGG CCCAAATTAT TTAACGCGTT TAGTTAAAGA AAAAGCTACA
CCAGATGAGC GGGATTTTAA CTTTTCAGCA AATAAAACGA TTACCTTATC AGGTGATGCT
GCTGAGAATC ATCAAGCAAA TCATTTGATG GATAAAGCGA ATTGGGCGGA GAAAGAGTGG
CGTTCAACAG AACTAAATAC CCGAATTTCT TGTGTTCGCC AATTATTGGC TAAAATAGCG
CACGTTGAAA TTGTCGATGA TCTAGCTGAA GATTTAAACC ATACCCTAGT CTTGGCGCGT
TCACAGCTTA TTGATATTGA AAAGCGTTTG AAAAAACCAC AACAATTACC AGGGCCAACA
GGTGAATCAA ATATTATTTA TTTGGAAAAC CGAGGCAATA TTATTTGTTA TGCGGATGAA
AATGTTAGTT TTCACTTTTG GGTGCAATCT ATTGTTACCT CGCTTGCTAC AGGCAATACC
GTTATTGCTG TTGTTTCTGA TCTGTTTTAT CAAGAAGCAT TGGAATTTAG AGACAAATTT
GTTGCCACAG GCGCTGGTAA AGATGTTTTT CAGGTAGCTA AACAATGTCA TTTAGAAGCT
ATGCTGGCAC ACCCCGCTTT GTCTGGTGTT GTGGTCGATA GTGGTTGTGA AATCAAGCAT
TATATTAGTG AAAAATTAGC ATTACGTCAT GGGGCTATTT TACCGGTAAT AACCTCTGAA
TATTTTGATA CTATGATTCA ACGTTTGGTT ACAGAAAAAA CGATTAGTAT TGATACTACG
GCTTCAGGGG GAAATACCTC ACTGATGACC CTGGTTGAAG AAGACTAA
 
Protein sequence
MLFTGSLITD CPIRQKIREF YRIDENVAVD HILPAAEVNV SARSRAWERA RKMVLKIRQD 
QEGNGAIDSL LNEYSLSSEE GVVLMCLAEA LLRVPDKHTQ DELIRDKISQ GQWSSHLGAS
DSLFVNASSW GLLLTGSMVN YADKRKKEQF GLLKKTVGRL GEPVIRKSMN YAMKVMGKQF
VMGETIKAAT ERAATKEQQG YVYSYDMLGE GARTMADANM YLKAYQDAIN AIGEVAVASG
KNDPRKVPGI SIKLSAIHPR YEFSHKERVM TEIVPKLKAL CLQAKQYNIG LTVDAEESER
LDISLDIIEA VFSDSELGDW QGFGIALQAY QKRAIHVVDW LRDLTLRTER KMMVRLVKGA
YWDTEIKNAQ KDGLNHFPVF TRKSSTDVSY HACANKLLEY RDTIYPQFAT HNAYTAATIV
ELAGDDKAGF EFQCLHGMGD SLYDQIVKEE SIQCRIYAPV GHHEDLLAYL VRRLLENGAN
SSFVNAIVDE DQPVESLLED PVEKTQRLKA KYNNQIIMPI DLYRGEGEKG RDNSKGLDLT
DINEIIPLKA ALDNWFVDHL LNKNEVPDGA NAVMNPANRS EIIGFHQHAS HGDMLLMIDK
AETAFSTWSK TPAVDRAALL CRIGDILERH IDELIAMCIK EAGKVAQDGI DEVREAVDFC
RYYAARAIEL SSDERLEARG VVLCISPWNF PLAIFLGQVA AAIATGNTVL AKPAEQTGLI
ALRAIELMKS VGLPENVVQA VIARGSAVGN TIIPDSRIQT VMFTGSTETG TRISQTLSDR
GGDQVPLIAE TGGQNCMIVD STALPEQVVD DVISSGFQSA GQRCSALRVL FLQEDIADNV
ITMLQGALAE LHIGNPAKLS TDIGPVIDQK ALDALNAHAE YMKSHGKLLY QCEFSEDVVD
EDGHFFFAPR LYEIDDISVL KQEVFGPCVH IVRFKGNEIE SVVDKINGTG FGLTMGIHTR
IEHRAINLAK LSRAGNIYIN RNMIGAIVGV QPFGGRGLSG TGPKAGGPNY LTRLVKEKAT
PDERDFNFSA NKTITLSGDA AENHQANHLM DKANWAEKEW RSTELNTRIS CVRQLLAKIA
HVEIVDDLAE DLNHTLVLAR SQLIDIEKRL KKPQQLPGPT GESNIIYLEN RGNIICYADE
NVSFHFWVQS IVTSLATGNT VIAVVSDLFY QEALEFRDKF VATGAGKDVF QVAKQCHLEA
MLAHPALSGV VVDSGCEIKH YISEKLALRH GAILPVITSE YFDTMIQRLV TEKTISIDTT
ASGGNTSLMT LVEED