| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4364 |
|---|
| Symbol | |
|---|
| ID | 3521826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4596120 |
|---|
| End bp | 4596773 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637286805 |
|---|
| Product | ECF subfamily RNA polymerase sigma factor |
|---|
| Protein accession | YP_271013 |
|---|
| Protein GI | 71281354 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATAGCC AAATAAGACA AGATAAAAAA GTCATTGACC TAAAGGCGCG CTTTAGTGCC
AATAAAGATC ATCACTCCGG TGATAGTGAT GATGAACAGT TATGGATAAC AGAAGCTAAG
CAAGGGTCTC AAACCGCTTT TTATCAGCTT TATGAAAAAT ATCATCGGCG AATTTATGCC
TTGTGTTGGC GCATGTTGGC AGATAAAGAC AGTGCTGAAG ATGTCTGCCA GGAAGTTTTT
GTCGTCTTGT GGCAAAAAAT TAATAATTTT CGTGGTGAAA GTAAATTTAG TACTTGGCTA
CACAGTGTCG CAACAAATGT AGTGCTGGGA CACCTACGTA AACATAAAAA TTGGTTGCAG
CGTGTTTTTA GTATTGAAGA GCAAGGGGTT GGCGTTCAAG AACCTAGTGT TAGTTTAACC
GATGATTCAA CGCTCACGCT ATTAGACCAG CACATTGCCC GTTTACCAGA ACGAGCACGC
TTAGTTTTTG TTTTGTTTGC TGTTGAGGGC TATCGCCATG AGGAAATTTC CACCATGTTA
AAAATGGCAG TAGGCTCGAG TAAGTCGCAA TACCACAGAG CGAGAAGCTT ATTAAAAGAA
TCATTAATAG CTAATGGTTT TGTATCGATT GAGGAGGAAA TAAATCATGA GTAA
|
|---|
| Protein sequence | MDSQIRQDKK VIDLKARFSA NKDHHSGDSD DEQLWITEAK QGSQTAFYQL YEKYHRRIYA
LCWRMLADKD SAEDVCQEVF VVLWQKINNF RGESKFSTWL HSVATNVVLG HLRKHKNWLQ
RVFSIEEQGV GVQEPSVSLT DDSTLTLLDQ HIARLPERAR LVFVLFAVEG YRHEEISTML
KMAVGSSKSQ YHRARSLLKE SLIANGFVSI EEEINHE
|
|---|
| |