| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4347 |
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| Symbol | degS |
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| ID | 3520547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4580492 |
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| End bp | 4581562 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637286788 |
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| Product | serine protease DegS |
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| Protein accession | YP_270996 |
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| Protein GI | 71280084 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAACTCT TTTCTTCAAT CAAATATACA ATTACAGCAA TAAGTTACGG TGTCCTGATC
GCTGTAGTGT TATTACTCCT AATACCTGGA TTAGTTCCTG GCTTAAACGA TACCAGTTTA
GCAACAAGCC TTTTTAAAGG TAGTCAAGCG CAACAAGCAC CACTTTCATT TGCCAAAGCA
GTTAGCATCG CTAGCCCTGC TGTTGTTAAT ATTTATTCTC AACAAATTGA AGTGAATCCA
CAATACGGTC GAAAAGCGCG TAAAAGTACT CGCTTAGGCT CAGGCGTGAT TATGGACACC
CATGGTTATA TATTGACTAA CTTACACGTA ATTCGCCAAG CAGACCTTAT TCAGGTACTA
CTGCAAGATG GCCAGATATA TCCAGCCGAG TTGATAGGTT TTGACCATTA TACTGACTTA
GCGGTTCTCA AAGTCAATGT TAACAACTTG CCTGTAATCC CACAAAAGGA GCAGCAAACA
TCGCTAGTTG GTGATATTGT TCTTGCGATT GGTAACCCAC TAAATTTAGG TCAAACAGTG
ACTCAAGGCA TTATTAGTGC AACAGGCCGT AATGGTTTGA GTAACACTAG CTATTTAGAG
TTTTTACAAA TGGATGCTGC CATCAATGAA GGAAATTCCG GTGGAGCACT TATCAACAGT
AATGGTATTT TAGTCGGCAT TAATTCAAGA AAATTCACCC AGTCAAATCC ACAATTATCA
ATCCAAGGCA TTTTCTTTGC TGTACCTTAT CAATTGGCTT ACAAGGTAAT GCGACAAATC
ATTGAAAATG GCAAAGTGGT ACGAGGTTGG TTAGGTATTT CCACTAACCG TTACCATAAA
GAACTAAAAG GCTTTGTTAT TGAAGAAGTC ATGGATAATA GCCCTGCAAA AGCAGCGGGA
ATACAAGTTG GCGATGTAGT TTATCAGATC GATAATGAGT CGATTAATAG CGTAACTGGT
GCCTTAGATA TTATTGCTGA AACCCAGCCA AATACAGAGC TAACCTTCAA GATTTACCGA
CAAGGTAATA CCATAGAAGC TAAGGTAAAA ATCATTGAAT TAAGAAACTA A
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| Protein sequence | MKLFSSIKYT ITAISYGVLI AVVLLLLIPG LVPGLNDTSL ATSLFKGSQA QQAPLSFAKA
VSIASPAVVN IYSQQIEVNP QYGRKARKST RLGSGVIMDT HGYILTNLHV IRQADLIQVL
LQDGQIYPAE LIGFDHYTDL AVLKVNVNNL PVIPQKEQQT SLVGDIVLAI GNPLNLGQTV
TQGIISATGR NGLSNTSYLE FLQMDAAINE GNSGGALINS NGILVGINSR KFTQSNPQLS
IQGIFFAVPY QLAYKVMRQI IENGKVVRGW LGISTNRYHK ELKGFVIEEV MDNSPAKAAG
IQVGDVVYQI DNESINSVTG ALDIIAETQP NTELTFKIYR QGNTIEAKVK IIELRN
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