| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4346 |
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| Symbol | degP |
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| ID | 3520194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4578975 |
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| End bp | 4580354 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637286787 |
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| Product | serine protease DegP |
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| Protein accession | YP_270995 |
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| Protein GI | 71279733 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0589016 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT CATTTACATC ATCTAAATTA TCAATTGTCA TCAGTGCCGC ATTATTATCA
TCGACCTTAG CACTTACTAG CGCTCCTGCA TTAGCAAACT TACCTGCCCA AGTAGATGGC
CATGTAATGC CCAGCTTAGC TCCAATGCTT GAACATGCGA CTCCAGCTGT TGTTAGTATC
TCTGTAATAG GCACCCATAA TGTGCCACAA CAAAATGTAC CTGACGCATT CAAATTTTTC
TTTGGTAATA AAGAAAAAAA TCAAGGACAA CCTCAACAAA GACCATTTCG CGGCTTGGGC
TCAGGTGTAA TTATTGATAG TGATGAAGGT TATGTTGTTA CCAATAACCA TGTCATAGAA
AATGCTGACA AAATTATGAT CACCTTAAAA GACGGTCGTC AGTTAGAAGC GAAGAAAATC
GGTAGCGATG CAAAAAGTGA CATTGCTTTA TTACAGATTG ATTCTGAAAA CTTAAGTGAA
ATCAAATTAG CCGATTCCGA TAATTTGCGT GTTGGAGATT TCACTGTCGC GATTGGTAGT
CCGTTTGGTC TAGGACAAAC CGTTACTTCT GGCATTGTTA GTGCGCTAGG ACGTAGTAAT
CTAAATATCG AACATTATGA AGACTTTATT CAAACCGATG CTGCCATAAA TAGTGGTAAC
TCCGGTGGCG CTTTAGTTAA CTTGCGCGGT GAGTTGATTG GTATCAACAC AGCGATATTA
GGGCCTAGTG GTGGTAATGT CGGTATTGGC TTTGCTATCC CGAGTAATAT GATGCATAAC
CTAATTACGC AGATAATTGA ATTTGGTGAA GTACACCGCG GTATTCTGGG TGTATCTGGA
CGAAGTGTTA ACAGCGAAAT TGCCAAAGCA ATGGAGCTAG AAACAAGTCA AGGTGGCTTT
ATTGAGCAAG TGATGCCTGA CTCTGCTGCA GACGAAGCGG GTATTAAGGC AGGTGACGTG
ATCATTGCCG TGAATGGTAA AGCCATTAAA AGCTTCTTTG AACTACGCGC TAAAATTGGT
TCAATTGGTG CGAATAAAAA AGTTAAGTTA ACGGTGATAA GAGATGGAGA CAACAAAGTA
TTTACCGTTA AGTTAAAGCA AGATCAAAGT GCAGATATTA CTGCCGCCAG TATTCACACT
ATGTTAGATG GTACTAAATT AGAAAATGAC ACCAAGAAAC AGGCGATTAT CATAGAACAA
GTTGCCGAAG GCTCTCCGGC ACAAAGGGCA GGATTTCAAG CAGGTGATAT TATCACGGGC
GTTAACCGTA GTCGTATCAA AGATATTGCT CAATTACGTG ATTACCTTAA AGATAAAAGT
GGTGTACTAG CGCTAAATAT TGTTCGGGAT AATCATTCCC AGTACATAAT GATCCGTTAA
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| Protein sequence | MKKSFTSSKL SIVISAALLS STLALTSAPA LANLPAQVDG HVMPSLAPML EHATPAVVSI
SVIGTHNVPQ QNVPDAFKFF FGNKEKNQGQ PQQRPFRGLG SGVIIDSDEG YVVTNNHVIE
NADKIMITLK DGRQLEAKKI GSDAKSDIAL LQIDSENLSE IKLADSDNLR VGDFTVAIGS
PFGLGQTVTS GIVSALGRSN LNIEHYEDFI QTDAAINSGN SGGALVNLRG ELIGINTAIL
GPSGGNVGIG FAIPSNMMHN LITQIIEFGE VHRGILGVSG RSVNSEIAKA MELETSQGGF
IEQVMPDSAA DEAGIKAGDV IIAVNGKAIK SFFELRAKIG SIGANKKVKL TVIRDGDNKV
FTVKLKQDQS ADITAASIHT MLDGTKLEND TKKQAIIIEQ VAEGSPAQRA GFQAGDIITG
VNRSRIKDIA QLRDYLKDKS GVLALNIVRD NHSQYIMIR
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