| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4328 |
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| Symbol | |
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| ID | 3522397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4557775 |
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| End bp | 4564356 |
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| Gene Length | 6582 bp |
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| Protein Length | 2193 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637286769 |
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| Product | cadherin domain-containing protein |
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| Protein accession | YP_270978 |
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| Protein GI | 71281925 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.859375 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAAGT TAACTTTACT TGTTGAATTA GCAAATGGCG AACGTCAAAC ATTTACTTTG
GTCGAATTAC AGATTTTGAC CGCATTAAAT GGTGCAATTT ATACGGTAGT TAAAGAAGGA
ACTCAACAAG CTCCTCAAGA GTTAGTGTTA AAGCGTAAAG ATGATGATTT AACAGTAGAG
GTAGAAGGAG TAATTGTTGC TCAAGTTGAA GGTTTTTATA GTGAATCGAT GAATGCGACT
TTCTCAGCGG ATGGTAGTTT TACGCCCGCT GAAGGGATGA GTATCAGCAG TACGGATAAG
CCAGTGATCG CTGAGGGCAA TGAACCTATT GTTCGAAAAG CACAAGAGGA TAATGATTTT
TTAGGACTGT CCCCTTTAAC ATGGGGTGTT GCCTTATTTG GTGCTAGTGT GCTTGGCTCC
GTAGCGTTGG ATAGTGATGA TGAAGATTAT CCAAGCTACC AGGTGACCTT GGATCCAGTA
GCTGGTCCTT TTAAGTCAAT TGCGACTATT ACATTGTATG ATAAAGATGG TAATGAACTG
GCAAATAAAG AGCATGATTT TAGTGATGGA CCGGTTGTTT TCACCATTGA TAATGGTTAT
CAAGGACCAC TATTAGCTAA GGTTGTCGAT AGCAATGGTA GTGAAGGTGA TTATATAGAT
GAAACTACTG GGAAACTTGT TAGTTTAGGC GATTCGTCAC TGCGTGCAAT GGGACACACT
GATGGCTTTG GTGATGTCAC TATGAGCATT ACTCCTTTAA CTGAGCTTGC TTCGCGTCAG
GCAGGTATTG GTGAAGACAA TAAAGTAACA ACAGAAAATG TTGCAGTAAA CGCTGAGGTT
TCCAAGTTAT TTGATGTTGA AGACATATTA GCCCCAGTAA CAACTATTTT AGATGACGAT
TATGACAGTT CAGATGGCCT TAATGCCGCC GAGCAATATG GTAATATTTT GGCATTGCTA
TCAGGAACAG AGAATGCATT AGCAAGCTCG GGTGGGAGTG ATTCAACATC AATGCTGAGT
ATTGATGTGA CCATTAATAA AATAAGAATC GAGATAGAAA CGCAGGCTGA TGGTGAGTTG
GCCTTTACAA AGTCTGGATT TGAATTACTG CAGGACGGGT TGGAGGCATT TGAAGCAGGT
GTGAATGCTG AAAAGGCTGA CTTAGCCGCC GCATTGATTA AACCTCCTGT CATTGATACG
GAGCGGGGCA GTGTTAATAA AGTCGAAAGT GAAGCAGGTG TAGCTGTTCA GGTAGACAAT
GTAAACATTG GTGATTCGGT TGTTATCCAA TGGGGTAACC AATTTCATAT TGTTGAAATT
AGTGGTGCTG AGCTGATAGA TGGCGTAGCA ACCATTTTAG TCCCTGGCTC AGTTATTAAT
GCTGCCGGTG AGGGACGTAT TGCAGTTACC TCTCATATAA GTGAACAAGT TATAAGTCCG
GCAGCCTTTA TTAATGTAGA TACCACTAGC GCAGTTTTTG ATTCTAGCTC TCTTGCGTCT
GATTTAGATG AAAACAGTGG TACTCACCAG GTTGTTTATC AAGCAGTCAC TAATGATGAG
AATGCCAGGT TTAGCTTAAC GGGTGATGAT GCATCTTTAT TTGCTATCAA CAGTAGTACG
GGGACGGTGA TCTTAACGGC AAATCCTGAT TATGAAAGCA AAGCCGATTA CAATTTTACC
TTAGTGGCGA GCGATCCGGC AGGTAACATT AGTGAGCAAT CAGTCACGTT CGATATTACC
GATCTTGATG AAGTCGCGCC GACGATTACG TCAGCAAGCA CGGCTAGCAC AATCGATGAA
AACAGTGGCT CCGGACAAGT GGTGTACACA GTCACGTCAA CTGATAGCAG TGATATTACC
ACGGGCGCAA CGTCTTACAG CTTAAAAGCC GGTGATGATG CGGCCCTATT TAACATCAAC
AGCAGTACCG GGGCAGTGAC GTTAACGGCC GATCCGGATG ATGAAACCAA AGCCGATTAC
AACTTTACCG TGCTGGCGAG CGATGCCGCT GGTAACAGCA GAGAACAAGC GATCACGCTT
GATATTATCG ATCTTGATGA TGTTGCGCCA ACAATCACCT CAGCTTCAAG CGCGACCGCC
CTTGATGAAA ACAGTGGTGC CGGTCAAGTG GTATACACTG TCACGTCAAC TGATAGCGAT
GATGTTTCTT CGGGCAGCAC GGATTACAGC TTAAAAACCG GTGATGATGC AGCCTTATTT
ACCATCAACA GCAGTACCGG GGCGGTGACT TTATCTGCCG ATCCGGATGA TGAAACCAAA
GCTGATTACA ACTTTACCGT AGTGGCAAGT GATAGTGCTG GTAACAGCAC TGAGCAAGCG
ATCACACTCG ATATTATCGA TCTTGATGAA GTTGCGCCGA CGATTACCTC GACGGCGATA
GCGGCAGCCC TTGATGAAAA CAGTGGCGCC GGACAAGTGG TCTACACGGT CACGTCAACC
GATAGCGGTG ATATTGCTAC GGGCGCAACG GCTTACAGCT TAAAAATCGG TGATGATGCA
GCCTTATTTA CCATCAATAG TGGTACCGGG GAGGTGACGT TAATAGCCAA TCCGGATGAT
GAAACCAAAG CCGATTACAA CTTTACCGTA GTGGCAAGTG ATAGTGCTGG TAACAGCACT
GAACAAGCGA TCACGCTCGA TATTACCGAT CTTGATGATG TCGCGCCGAC GATAACCTCG
TCGGTGACAG CAACCGCTAT AGATGAAAAT AGCGGCGTGG GTCAAGTGGT GTATACGGTC
ACGTCAACCG ATAGCGGTGA TATTGCCACG GGTGTAACGG CTTACAGCTT AAAAGCGGGA
GATGATGCAG CCTTATTTAC TATCAACAGC AGTACCGGGG CGGTGACGTT AACTGCCAAT
CCGGATGATG AAACCAAAGC CGATTACAGC TTTACCGTGG TGGCGACTGA TACCGCTGGT
AACAGCAGCG AGCAAGTGAT CACGCTCGAT ATTACCGATC TTGATGAAGT TGCACCAACG
ATCACTTCAG CTTCAAGCGC GACCGCCCTT GATGAAAACA GTGGTGCTGG CCAAGTGGTC
TACACGGTCA CCTCAACCGA TAGCGGTGAT ATTGCCACGG GCGCAACGGC TTACAGCTTA
AAAACCAGTG ATGATGCGGC CTTATTTACC ATCAATAGCA GTACCGGGGC GGTGACCTTA
ACAGCCAATC CGGATGATGA AATCAGAGCC GATTACAACT TTACTGTGGT GGCGACTGAT
ACCGCCGGTA ACAGCCGTGA GCAATCGATC ACGCTCGATA TTACCGATCT TGATGAAGTC
GCGCCGACGA TCACCTCGGC GTCGATAGCG GCAGCTATTG ATGAAAACAG TGGTGCCAGT
CAAGTGGTGT ATACGGTCAC GTCAACCGAT AACGGAGATA TTGCTACCGG TGCAACGGTT
TACAGCTTAA AAGCGGGAGA TGATGCGGCC TTATTTACCA TCAACAGCAG CACCGGGGCG
GTGACCTTAA CGGCCAATCC GGATGATGAA AGCAAAGCCG ATTACAACTT TACCGTGGTG
GCGAGCGATG CCGCTGGTAA TAGCACTGAG CAAGCGATCA CACTTGATAT TACTGATCTT
GATGATGTCG CGCCAACAAT CACCTCGGCG ACAACAGCAA CCGCCCTTGA TGAAAACAGT
GGTGCTGGCC AAGTGGTATA TACGGTCACG TCAACTGATA GCGGTGATAT TGCCACGGGC
GTAACGGTTT ACAGCTTAAA AGCCGGTGAT GATGCAGCTT TATTTACCAT TAACAGCAGT
TCGGGGGCGG TGACCTTAAC GGCCAATCCG GATGATGAAA GCAAAGCCGA TTACAACTTT
ACCGTAGTGG CAAGTGATGG TGCCGGTAAC AGCAGCGAAA AAGTGACCAC GCTCGATATT
ACTGATCTTG ATGAAGTTGC ACCAACGATC ACTTCAGCTT CAAGCGCGAC CGCCCTTGAT
GAAAACAGTG GCGCTGGCCA AGTGGTCTAC ACGGTCACGT CAACCGATAG CGGTGATATT
GCCACGGGTG CAACGGCTTA CAGCTTAAAA GCCAGTGATG ATGCGGCCTT ATTTACCATC
AATAGCAGTA CCGGGGCGGT GACCTTAACG GCCAATCCAG ATGATGAAAG CAAAGCCGAT
TACAACTTTA CTGTGGTCGC GAGTGATGGT GCTGGTAACA GCACTGAGCA AGCGATCACG
CTTGATATTA TTGATCTTGA TGATGTTGCA CCAACAATCA CTTCAGCTTC AAGCGCGATA
GCCCTTGATG AAAACAGTGG CGCCGGCCAA GTGGTATACA CGGTCACGTC AACTGACAAT
GGTGATATTG CTACCGGCGC AACGACCTAC AGCTTAAAAG CCGGAGATGA TGCGGCCTTA
TTTACCATCA ACAGCAGTAC GGGGGCGGTG ACCTTAACGG CCAACCCGGA TGATGAAAGC
AAAGCAGATT ACAACTTTAC TGTGGTGGCA AGTGATGGTG CCGGTAACAG CAGCGAAAAA
GCGATCACGC TAGATATTAC CGATCTTGAT GAAGTTGGAC CAATTATTAC TTCAGCTTCA
AGCGCGACCG CACTTGATGA AAACAGTGGG GCTGGCCAAG TGGTGTACAC GGTCACGTCA
ACTGACAATG GTGATATTGC TACCGGCGCA ACGACCTACA GCTTAAAAAG TGGGGATGAT
GTGGCCTTAT TTACCATCAA TAGCAGTACC GGGGCGGTGA CCTTAACGGC CGATCCGGAT
GATGAAAGCA AAGCTGATTA CAACTTTACT GTGGTGGCGA GTGATGGTGC CGGTAACAGC
AGCGAAAAAG CGATCACGCT TGATATTATT GATCTTGATG AAGTCGCGCC GACGATAACC
TCGGCGGCGA TAGCGGCAGC TATTGATGAA AATAGTGGTG CTGGCCAAGT GGTTTACACG
GTCATGTCAA CTGACAATGG TGATATTGCT ACCGACGCAA CGACCTACAG CTTAAAAAGT
GGAGATGATG CGGCCTTATT TACCATCAAC AGCAGCACCG GGGCGGTGAC CTTAACGGCC
AATCCGGATG ATGAAGGCAA AGCCAATTAC AACTTTACCG TAGTGGCAAG TGATGGTGCC
GGTAACAGCA GCGAAAAAGC GATCACGCTC GATATTACTG ATCTTGATGA AGTTGCACCA
ACGATCACTT CAGCTTCAAG CGCGACAGCT ATTGATGAAA ACAGTGGTGC TGGCCAAGTA
GTATACACGG TCACGTCAAC CGATAGCGGT GATATTGCCA CTGGCGCAAC GCTTTATAGC
TTAAAAGCCG TTGACGACGC AGCCTTATTT ACCATCAACA GCACTTCGGG AGCGGTGACC
TTAACCGCCA ATCCGAATGA TGAAACCAAA GCCGATTACA ATTTTACCGT GGTGGCTACT
GATTCGCCCG GTAACAACAG CGAAAAAGCG GTCACGCTTG ATATTACCGA TCTTGATGAA
ATCGCGCCGA CGATCACCTC GGCGGCGACA GCAACCGCTA TTGATGAAAA CAGTGGTGCT
GGTCAAGTGG TGTACACGGT CACGTCAACC GATAGCGGTG ATGTTGCTAT AGGCGCAACG
GTGTACAGCT TGAAAACCGG TGATGATGCC GCATTATTTA CCATCAACAG CAGTACAGGA
GCAGTGACCT TAACGGCCAA TCCGGATGAT GAAACCAAAG CCGATTACAG CTTTATCGTG
GTGGCGACCG ATACCGGCAA TAACAGTAGT GAACAAGTCG TCACGCTTGA TATTAATGAT
CTGGATGAAG TCGCACCGAT TATTAACAGT GTTGTATTAA GTGATACAGA CTTAGCTAAA
AGTGAAACGG CGACTTTAAC AATTACTTTT AGTGAGGCGG TAACCAATTT TACTAACGAC
GACATTGATT TAACGAGTGC AAACGGCACA CTGTCGGCAA TTAGTACAAG TGATAGCGGC
GTGACATGGA CCGGTACATT TACACCAACA GATGGGATCA CAGATACGAG CAATACTATA
ACCGTAGTCA ATACGGGGAT AGCTGATTTA GCAGGAAATG TGCCAACAGA CCCCGTTACA
TCAGATAACT TCGCTATAGA TACTGCAGTG GTGGTCAATG AAACTGTCGT GGTGTTTGAT
TTAGTCGGAG GGACTTCATC GGACCATTCA AGCCGAACAT TCGACAGTAA TACAACTTAT
ACGATCTACA TTAAGGTCAA TTCGAGTGTT AGTACTTTAC TCACTAATGA AAACAGTGCA
AATGGGACAT GGGGTTTATG GTCGGGGGCG GATAATTTGG GCAGCGATGA CCGAGTGATA
ATCGCCGGGA ATGGCTTGGA TTTAAAAGGT GGAGCGGGTA ACGTTTCGGT GACTTCCGTA
TCCGAAACGA ATAGTGCATT AAACCTATTG GCTGCTGGTC CAACGACAGT CGTGGTTATT
AATCAGGAGG GGACGTTGTT TCGTAATGTA GACGGAGGAA GCGACACTTT TGATATTTGG
ACCGGAATAG TACCTAATAT GCAGCTAGAC GCTGGGGCAG GCGGCGAGTT ATACACTAAT
ACCATGCCAG TGGGCATAAT GACCAGCCAA GGTCTCGCGT AG
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| Protein sequence | MIKLTLLVEL ANGERQTFTL VELQILTALN GAIYTVVKEG TQQAPQELVL KRKDDDLTVE
VEGVIVAQVE GFYSESMNAT FSADGSFTPA EGMSISSTDK PVIAEGNEPI VRKAQEDNDF
LGLSPLTWGV ALFGASVLGS VALDSDDEDY PSYQVTLDPV AGPFKSIATI TLYDKDGNEL
ANKEHDFSDG PVVFTIDNGY QGPLLAKVVD SNGSEGDYID ETTGKLVSLG DSSLRAMGHT
DGFGDVTMSI TPLTELASRQ AGIGEDNKVT TENVAVNAEV SKLFDVEDIL APVTTILDDD
YDSSDGLNAA EQYGNILALL SGTENALASS GGSDSTSMLS IDVTINKIRI EIETQADGEL
AFTKSGFELL QDGLEAFEAG VNAEKADLAA ALIKPPVIDT ERGSVNKVES EAGVAVQVDN
VNIGDSVVIQ WGNQFHIVEI SGAELIDGVA TILVPGSVIN AAGEGRIAVT SHISEQVISP
AAFINVDTTS AVFDSSSLAS DLDENSGTHQ VVYQAVTNDE NARFSLTGDD ASLFAINSST
GTVILTANPD YESKADYNFT LVASDPAGNI SEQSVTFDIT DLDEVAPTIT SASTASTIDE
NSGSGQVVYT VTSTDSSDIT TGATSYSLKA GDDAALFNIN SSTGAVTLTA DPDDETKADY
NFTVLASDAA GNSREQAITL DIIDLDDVAP TITSASSATA LDENSGAGQV VYTVTSTDSD
DVSSGSTDYS LKTGDDAALF TINSSTGAVT LSADPDDETK ADYNFTVVAS DSAGNSTEQA
ITLDIIDLDE VAPTITSTAI AAALDENSGA GQVVYTVTST DSGDIATGAT AYSLKIGDDA
ALFTINSGTG EVTLIANPDD ETKADYNFTV VASDSAGNST EQAITLDITD LDDVAPTITS
SVTATAIDEN SGVGQVVYTV TSTDSGDIAT GVTAYSLKAG DDAALFTINS STGAVTLTAN
PDDETKADYS FTVVATDTAG NSSEQVITLD ITDLDEVAPT ITSASSATAL DENSGAGQVV
YTVTSTDSGD IATGATAYSL KTSDDAALFT INSSTGAVTL TANPDDEIRA DYNFTVVATD
TAGNSREQSI TLDITDLDEV APTITSASIA AAIDENSGAS QVVYTVTSTD NGDIATGATV
YSLKAGDDAA LFTINSSTGA VTLTANPDDE SKADYNFTVV ASDAAGNSTE QAITLDITDL
DDVAPTITSA TTATALDENS GAGQVVYTVT STDSGDIATG VTVYSLKAGD DAALFTINSS
SGAVTLTANP DDESKADYNF TVVASDGAGN SSEKVTTLDI TDLDEVAPTI TSASSATALD
ENSGAGQVVY TVTSTDSGDI ATGATAYSLK ASDDAALFTI NSSTGAVTLT ANPDDESKAD
YNFTVVASDG AGNSTEQAIT LDIIDLDDVA PTITSASSAI ALDENSGAGQ VVYTVTSTDN
GDIATGATTY SLKAGDDAAL FTINSSTGAV TLTANPDDES KADYNFTVVA SDGAGNSSEK
AITLDITDLD EVGPIITSAS SATALDENSG AGQVVYTVTS TDNGDIATGA TTYSLKSGDD
VALFTINSST GAVTLTADPD DESKADYNFT VVASDGAGNS SEKAITLDII DLDEVAPTIT
SAAIAAAIDE NSGAGQVVYT VMSTDNGDIA TDATTYSLKS GDDAALFTIN SSTGAVTLTA
NPDDEGKANY NFTVVASDGA GNSSEKAITL DITDLDEVAP TITSASSATA IDENSGAGQV
VYTVTSTDSG DIATGATLYS LKAVDDAALF TINSTSGAVT LTANPNDETK ADYNFTVVAT
DSPGNNSEKA VTLDITDLDE IAPTITSAAT ATAIDENSGA GQVVYTVTST DSGDVAIGAT
VYSLKTGDDA ALFTINSSTG AVTLTANPDD ETKADYSFIV VATDTGNNSS EQVVTLDIND
LDEVAPIINS VVLSDTDLAK SETATLTITF SEAVTNFTND DIDLTSANGT LSAISTSDSG
VTWTGTFTPT DGITDTSNTI TVVNTGIADL AGNVPTDPVT SDNFAIDTAV VVNETVVVFD
LVGGTSSDHS SRTFDSNTTY TIYIKVNSSV STLLTNENSA NGTWGLWSGA DNLGSDDRVI
IAGNGLDLKG GAGNVSVTSV SETNSALNLL AAGPTTVVVI NQEGTLFRNV DGGSDTFDIW
TGIVPNMQLD AGAGGELYTN TMPVGIMTSQ GLA
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