| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4324 |
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| Symbol | |
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| ID | 3523342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4549785 |
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| End bp | 4550996 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637286765 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_270974 |
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| Protein GI | 71278693 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.415601 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTATTTG ATAGTTTTTT TTCCAATGAT GACGATAATC AAGAGTCAAC TGCGCGTTTA
GAGAGTTATT ACCTGCGTAA CTATTCATTA GTGTTATGGG GGATATTGAT CGGGCTGGTT
GTTTTTGTGC TGTGGGCTTC AAACTTTCGA CTTGACCAAG TGGCGCGAGG TACAGGCGAA
GTGATTGCTA GTAGCCGTGT GCAAATTATT CAATCAGTTG ATGGGGGAGT GATTTCCAAT
TTATATGTAA AAGAAGGGGA TAGTGTTACT AAAGGGCAGG TAATTGCGAC ATTAGATACC
ACGCGTATTG GCGCTGCAGT GAAAGAGGTT GATGCTCGCC TTTCTGCATT AAGAGCAAAA
GCAACGCGAT TGCGTGCAGA AATTCTTGGC AATAAAACGT TAGTTTTTGC TGATGATTTA
CTGCGCTTTC CTGAGCAGAT AAAGGTTGAA CGTGCTTTAT TTGAGCAAAA AAGTACCACC
TTGGCTGAAG AGTTAAAGGC TTTAAAAAAG GGTGTGGATT TAGCGCGAGA AGAGTCTGAA
TTGATTAAAA AATTATCAGC ATCAGGTGAT GTGAATCGTA CCGAAGTTAT TAGAGCCGCT
AGAAGCTTGA ATGACAGTGA AGCTAAATTA TTGAATAGAA AAAATACTTA CCTTGAAGAT
GCAGGGGCAG AGTTAGCAAA AGCTGAAGAT GAAATTGCAC AAAATGTACA AGTTTTAACG
CAACGTAAAC AACAATTAGA AGATAGTATT TTTAAGGCAT TATTACCAGG CATAGTGAAA
AATGTGCGCG TAACGACCAT CGGCGGAGTC TTGCGCGCAG GGGAAGAGTT GATGCAAATA
ATTCCTGTGG GTGATGAGTT AATTCTTGAA GCGAAAATTA GTCCTGCAGA TATTGCTCAA
GTGCGTAAAG GACTTAATGC CACTATACGT TTTGACCCGT TCGATTACAC TATTTATGGC
GGTGTTATTG GTGAGGTCGT TTATGTTAGT GCTGACACCT TAAAAGAAGA AAAAGGCCAA
GGTGAAGAGA TTTATTATCG GGTACACGTT TCAACAAAAA CAAACCCTGT GACAACGACT
TCGGGTAAGG TTTTAGATAT TTTACCGGGT ATGACAGCTC AGATTGATAT TAAAACAAGT
GACCGTACAG TGTTGAATTA TTTACTGAAA CCTTTGCGTA AAACATTGGC AGAATCTTTT
GGTGAACGCT AA
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| Protein sequence | MLFDSFFSND DDNQESTARL ESYYLRNYSL VLWGILIGLV VFVLWASNFR LDQVARGTGE
VIASSRVQII QSVDGGVISN LYVKEGDSVT KGQVIATLDT TRIGAAVKEV DARLSALRAK
ATRLRAEILG NKTLVFADDL LRFPEQIKVE RALFEQKSTT LAEELKALKK GVDLAREESE
LIKKLSASGD VNRTEVIRAA RSLNDSEAKL LNRKNTYLED AGAELAKAED EIAQNVQVLT
QRKQQLEDSI FKALLPGIVK NVRVTTIGGV LRAGEELMQI IPVGDELILE AKISPADIAQ
VRKGLNATIR FDPFDYTIYG GVIGEVVYVS ADTLKEEKGQ GEEIYYRVHV STKTNPVTTT
SGKVLDILPG MTAQIDIKTS DRTVLNYLLK PLRKTLAESF GER
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