| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4302 |
|---|
| Symbol | hrpB |
|---|
| ID | 3518946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4530598 |
|---|
| End bp | 4533135 |
|---|
| Gene Length | 2538 bp |
|---|
| Protein Length | 845 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637286743 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | YP_270952 |
|---|
| Protein GI | 71278456 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCGATGA CCGTGACTAC TTATTTACCA ATAGAAGCAA TTAAGCAACA ATTTTGCCAA
AGCCTCGATG AGCAAAATAC CCTCATATTA TCGGCTCCTC CTGGAGCGGG TAAATCAACT
TGCTTACCTC TATGGTTATT AACGTTGCCA AGTTTGGCTA ATAAGAAAAT TTATTTGCTA
CAACCTAGAC GTTTGGCCGT TAAAAATATA GCAACATTTT TAGCTGCACA GCTGAAAGAA
AAGGTAGGGG AAACTGTTGG TTATCGATTA CGTAATGATA GTAAAACATC AACGAGTACC
CGTCTTGAGG TCATTACTGA AGGCATATTA ACGCAGATTA TTCAAAAAGA TGCCGAACTA
TTAGGTACGG CATTGGTCGT TTTTGATGAA TTTCATGAAC GAAGTCTTCA GGGCGACTTA
GCTTTTGCAC TCACCCGTGA AGTACAAACA GAATTACGTG ATGATTTAAA AATACTGCTT
ATGTCGGCAA CGTTAGATAT TGAGTATTTA AGCCAAGCAT TGCCTGATGC TTATTTGTTA
AATAGTGAAG GACGGAGCTA TCCTATAGAA GTGAGTTATC AAGCCCCTAG GGCTCATCAA
CGTTGGCGTG AACATGCATT GGCGGTTATT AAAGATAAAA TGTATAACCA CATAGGCTCA
ATCTTAGTTT TTTTACCGGG TGTGGCCGAT ATTCGGTTTT TACTTGATAG CTTAATGGCT
CAAAAAGTGG AAGGTGTCAA AATTTGTCCC TTGTTTGGGG AGTTGAGTTT AAAGGAGCAG
CAGCAGGCAA TAGCACCCTG TCTAAGTGGA CATCGTAAAA TTGTTTTAGC TACAAATATT
GCAGAGACTT CATTGACCAT TGACGGCATT GATCTTGTTA TTGATTGCGG CCTTGAAAAA
GTTGCTGTTT TTGATAGTGC TAGTTTGATG AATAAGCTAA TGCAAAAGCA AATATCAAAG
GCTTCAGCTG TACAAAGAGC GGGGCGAGCA GGGCGATTAA TGCATGGGCA GTGTATTCGC
TTATACGGCA AAGATGATTT TGAGCGTAGA CCGCTGCACA GTGTTAATGA TATTCAACAA
GCTGATTTAC TACCTACACT CATCGAAGCT GCTCGATGGG GAGTCACAGC CTTAGCTGAG
TTGCCTTTAT TGGAACTGCC CAGTAAAGCT AAAGAGCAAC AAGCGTGGCA AGAACTACAA
AGCCTAGACA TTGTTGATGA TAAATACCTG CTAACCAAAC ACGGTGAAAA AGCATCCTGT
TTGCCTTGTC ACCCACGGTT TGCTCATATG ATATTAATGG CACAAACCCA AGGGCCGAAT
ATAACGCTGT TGGCTTGTTT AATCGCCGCT TTACTCGAAG AACGCGATAT TTTAAAAGGA
GAACAAGCGA AATATGATTG TGATTTAATT CATCGGTTGC AATTACTTAT TCAGCATAAA
AGTAATAAAA ATCCATTGTT AGAACGGATT CTACAACAAG CGAGTCGACT GGCTCAAAAT
GTACAATTAC GTTTTAGGGT TCATGATCTG GATTTAGCAA AAACAGGTGT ACTGCTCGCT
TATGCTTATC CAGAACGCGT GGCTAAAACC AGAGGGAATC ATGGTGATTT TATTTGCGTT
AATGGCAAAG GAACCTTAGT GAATGAACAA GATGCTTTAG CAGGTGAAGA CTTTATTGTT
ATCGCTCAAA CGAGTCAACT AGGTGGCCAG TTAACGGTGA GATTAGCTAG TCAGATTAGC
TTAGAAGAAA TAACCAATAC CTTTGCTGCA CAGATAAAGC AGCAAGATAT AGCAAATTTT
GATAATAAAA GCGGTAGAAT AATCGCTAAA AGACAAACCT CATTAGGTGC AATAGTCCTA
TCAGATCAGC CATTGAAACA AGAGGTAACC GCTGAATCAA TTAGTGCTAT GTGGTGTAGT
TTAGTGATGA AAAAAGGGTT AAGTTTTTTA TCCTGGCAGG CCAAAGATTT AGCACTAAAA
GCGCGTTGGT TATGGTTGAA CAAGTACTTT CCGGAATATG ATTTAGTGGT AATCGATGAT
GAACTGCTAT TGGCAAAATT AACAACGTGG TTTGCTCCGT TTGTTGGCGG TATAAAAACT
AAAGCGCAGC TCGATAAACT CGATTTATCA TCGATGTTAT TATCTTTACT TAGCTATCAA
GAACAAAAAA TATTAAAACA AGCTGCACCT ACTGTTTATG TTGGACCAAC GGGAAGGCAT
TGCCCAATTA GTTATTCTCA AGATGAATCT CCAAAAGTTT CATTACCTAT GCAAGAATTA
TATGGTCTAA CAATAACGCC CAATGTTGGC GCTATTGCGG GTATAAGTGA ACAAAATCAA
GGCATACCTC TACTTTTAGA GCTACTTTCA CCCGCGCAAC GCCCTATTCA AGTAACACAA
GATTTAGTTA AATTTTGGTC TGGTAGCTAT CAAGCAGTGC AAAAAGATAT GAAAAGCCGT
TATCCTAGGC ATTATTGGCC AGATGATCCT GTTAACGCTA AGGCAACTAA TAAAATGAAG
CGTCATATAA AAGAATAA
|
|---|
| Protein sequence | MSMTVTTYLP IEAIKQQFCQ SLDEQNTLIL SAPPGAGKST CLPLWLLTLP SLANKKIYLL
QPRRLAVKNI ATFLAAQLKE KVGETVGYRL RNDSKTSTST RLEVITEGIL TQIIQKDAEL
LGTALVVFDE FHERSLQGDL AFALTREVQT ELRDDLKILL MSATLDIEYL SQALPDAYLL
NSEGRSYPIE VSYQAPRAHQ RWREHALAVI KDKMYNHIGS ILVFLPGVAD IRFLLDSLMA
QKVEGVKICP LFGELSLKEQ QQAIAPCLSG HRKIVLATNI AETSLTIDGI DLVIDCGLEK
VAVFDSASLM NKLMQKQISK ASAVQRAGRA GRLMHGQCIR LYGKDDFERR PLHSVNDIQQ
ADLLPTLIEA ARWGVTALAE LPLLELPSKA KEQQAWQELQ SLDIVDDKYL LTKHGEKASC
LPCHPRFAHM ILMAQTQGPN ITLLACLIAA LLEERDILKG EQAKYDCDLI HRLQLLIQHK
SNKNPLLERI LQQASRLAQN VQLRFRVHDL DLAKTGVLLA YAYPERVAKT RGNHGDFICV
NGKGTLVNEQ DALAGEDFIV IAQTSQLGGQ LTVRLASQIS LEEITNTFAA QIKQQDIANF
DNKSGRIIAK RQTSLGAIVL SDQPLKQEVT AESISAMWCS LVMKKGLSFL SWQAKDLALK
ARWLWLNKYF PEYDLVVIDD ELLLAKLTTW FAPFVGGIKT KAQLDKLDLS SMLLSLLSYQ
EQKILKQAAP TVYVGPTGRH CPISYSQDES PKVSLPMQEL YGLTITPNVG AIAGISEQNQ
GIPLLLELLS PAQRPIQVTQ DLVKFWSGSY QAVQKDMKSR YPRHYWPDDP VNAKATNKMK
RHIKE
|
|---|
| |