Gene CPS_4293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_4293 
Symbol 
ID3521647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp4523601 
End bp4524605 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content37% 
IMG OID637286734 
ProductGGDEF domain-containing protein 
Protein accessionYP_270943 
Protein GI71281176 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0725016 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGATA TTAAATCACA CACTACGCCA ACAGCTTCGG ATGTACCGGT TGTAAATGAG 
CTGGCTCTTA AACAAATTAA TAGCCAAATT GCTAACCAAT TAAATACCGG TGTTTTGGTA
ATCGATGCTG ATTTTAATAT TGTTATTTGG AATCGTTTTT TACAGGTCCA TACCGATAAA
GTACCAGGTA GTATTATTGG GCAATCTATT TTTAGTGCAT TTCCAGAGCT GCCACAACGT
TGGTTATCTC GCAAGCTTAG TTCTGTTTTA CAATTAAATA CGCCGAGCTT TTGTTCCTGG
CAACAAAGAC ATCACTTATT CGAATTACCT CACACTAGAC CGATCACGAC AGATAGTGAG
TTTATGGCGC AAAACTGCAC CTTTCTACCT ATAGAAACTG ATGTTAACGG CAAACATATT
TGTATCTTAA TTGAAGATGT TACCGATGCT TGTCATTATC AAATGCAATT ACAAAAGACC
TTAGCTGAAA TAGCGCAAAT AAGTCGTATA GATGGTTTAA CTCAAGTTTA TAATCGAAGG
CATTGGCAAG ACTCCCTAGA ACAAGAATAC GCAAAAGCAC GACGACATGA TAAAAAGTTA
TCCTTGATAA TGCTTGATTT AGACCATTTT AAATTGCTCA ATGATAATTA TGGCCATCAA
GGTGGCGATA TGGTGTTAAT TGAGGTCAGT GCTTTAATAA GTACCTTATT AAGAGTTGAA
GATACCTTTG GGCGTTATGG TGGAGAAGAG TTCGCTATTA TTTTACCTGA GACAGATTCT
GCAGGAGCAA TAGAACTTGC ACAGCGTATT TGTAGAATAA TAGCCACAAC ACCTTTCACT
TATAATGATC AGGTGATAAA GGTAACAGTC AGTTTAGGCG TTGCACAACT TAGTAGCAAA
GAGTCTAATT ATGAAGAACT GATTACCCAA GCAGACAGTG CTTTATATCA AGCAAAATCT
CAGGGACGGA ATCAAGTATG TAATGCTGCG GAACTTGTTT CTTGA
 
Protein sequence
MSDIKSHTTP TASDVPVVNE LALKQINSQI ANQLNTGVLV IDADFNIVIW NRFLQVHTDK 
VPGSIIGQSI FSAFPELPQR WLSRKLSSVL QLNTPSFCSW QQRHHLFELP HTRPITTDSE
FMAQNCTFLP IETDVNGKHI CILIEDVTDA CHYQMQLQKT LAEIAQISRI DGLTQVYNRR
HWQDSLEQEY AKARRHDKKL SLIMLDLDHF KLLNDNYGHQ GGDMVLIEVS ALISTLLRVE
DTFGRYGGEE FAIILPETDS AGAIELAQRI CRIIATTPFT YNDQVIKVTV SLGVAQLSSK
ESNYEELITQ ADSALYQAKS QGRNQVCNAA ELVS