| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4189 |
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| Symbol | |
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| ID | 3518569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4410417 |
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| End bp | 4412123 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637286631 |
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| Product | spermidine synthase |
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| Protein accession | YP_270840 |
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| Protein GI | 71278896 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAA ACACTTTACC TCAAAAGAAG TCTCACCTAC TCGACGATAT CTTACTTATT
CTAACGATGG CTGTTCTAGC AGGCTGTGGG CTAATTTATG AGTATTTACT CTCTCATTAC
GCCGGTCGAG TGTTAGGCGT GATGGAAAGC ACTATCTACA CCATGATTGG CTTAATGATA
GTGTCGATGG GACTTGGTGC TTTTGCTGCT CGAAAAGTAC GTTGTGCTTT TAATGGTTTC
GTATGGCTAG AACTTATTAT TGCCTTACTG GGTAGCTCTG CCATTTTGAT CATTGGTGGT
TTAATCGCTA TTACGCAAAT ATTCCCGCAA CTGATTGCAG ATATGTTATC ACTTCCGCCT
GATATGAAAC CTCAAGGTGG GCTTTTCAAG GATTTAAGTT GGCTAGCGTT TAATAGCCCT
TATTTCTTTG GGGTATTACT CGGCTTTTTT ATTGGTATGG AGATCCCATT AATTGCTCGC
ATTCGTGAGA GCATTCACCA GCAACACCTT GCCAATAATT TAGGCACTAT TTATGGCGCA
GATTATGTTG GTGCTGGTAT TGGTGCGGCG ATTTGGGTTG TTTTTTTACT GAGTTTAGAC
ATTAGTAAAG CAGCAGCACT CACCGCAAGT TTAAACCTAA TTGCCGGTGC TTTTTTTATT
CTCCGTTATT GGCAACACCT TAATTGGCGT AAAACCTTTG TTGCTTTACA TTGTGCCTTA
GCTTTAATTA TAGTTTTAAT GTTTAGTTAT GGTAATCAAT GGCTTAATCA AATGAATAGT
CTGCTCTATC TTGATAAAGT GGTTCACACC GATAAAACTC GTTATCAACA GTTAACCTTT
ACCGAACGTC ATATGGGTCT TGAGCAAGAC AATATAATCA ATTTCTATCT AAATGGTCGT
TTACAGTTTT CATCTATTGA TGAACATATT TATCATGATT ACCTTGTTGC CCCTGTAATG
GCAGGCTCTG CGCGACATGA TAAGATATTA ATTATTGGCG GCGGTGACGG TTTAGCGTTA
AGAGATGTTT TAAAATACAA TCCAAAACAC GTGACGCTAA TTGATTTAGA TAGTGAATTA
ATTGATATTT TCAAACAACC AAAGAAGCAA GTAAACCCTC GCTTAGCGAG TCAAATTTTA
CAGTTAAATA AAAATAGTTT ACAAGATGAA CGAGTCACAA TTTATCGTGC TGATGCGTTT
ATTGCCATTA ATCAATTGTT AGAGGATCGA CAAACATTCG ACGCAATTAT TGTAGATTTA
CCAGACCCAA GTCATCCCGA TCTTAACAAA CTCTATTCGG TAAACTTTTA TGCACGACTT
AAGTTGTTGT TATCAGGTGA TGGTTTAATT GCAATTCAAT CAACTAGCCC TTATCACGCT
AAAGACTCTT TTATTGCTAT TGGTAATACT TTAGCAGCAG CTAAGTTTTC CCATGTAGAG
CAATATCACG ATAATGTGCC CAGTTTTGGT GAATGGGGAT GGACCATTGC CTCTAAGAGT
GGCGCTAGTC CGTTAACAAG ATTAAACAAA CTAACTAAGC TTCCAGTAGC GCATCAATGG
TTAAACTTGG CTATATTAAA GGCTGCTTTC ATTTTCCCTA ATGATTTTTA TCAGAACAAA
GATAATATTG GTATTAACAT TTTAGGCAGT CATACGATTT ATCAATTACA CCAAAGCGCT
TGGCAAGATC AACAAGGCTT AAATTAA
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| Protein sequence | MAQNTLPQKK SHLLDDILLI LTMAVLAGCG LIYEYLLSHY AGRVLGVMES TIYTMIGLMI
VSMGLGAFAA RKVRCAFNGF VWLELIIALL GSSAILIIGG LIAITQIFPQ LIADMLSLPP
DMKPQGGLFK DLSWLAFNSP YFFGVLLGFF IGMEIPLIAR IRESIHQQHL ANNLGTIYGA
DYVGAGIGAA IWVVFLLSLD ISKAAALTAS LNLIAGAFFI LRYWQHLNWR KTFVALHCAL
ALIIVLMFSY GNQWLNQMNS LLYLDKVVHT DKTRYQQLTF TERHMGLEQD NIINFYLNGR
LQFSSIDEHI YHDYLVAPVM AGSARHDKIL IIGGGDGLAL RDVLKYNPKH VTLIDLDSEL
IDIFKQPKKQ VNPRLASQIL QLNKNSLQDE RVTIYRADAF IAINQLLEDR QTFDAIIVDL
PDPSHPDLNK LYSVNFYARL KLLLSGDGLI AIQSTSPYHA KDSFIAIGNT LAAAKFSHVE
QYHDNVPSFG EWGWTIASKS GASPLTRLNK LTKLPVAHQW LNLAILKAAF IFPNDFYQNK
DNIGINILGS HTIYQLHQSA WQDQQGLN
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