Gene CPS_4176 details

Gene Information

• Locus tag: CPS_4176
• Symbol: parE
• ID: 3520339
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 4395658
• End bp: 4397544
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637286618
• Product: DNA topoisomerase IV subunit B
• Protein accession: YP_270827
• Protein GI: 71279877
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.599957
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGACC AATACAATTC CGACTCCATT GAAGTACTTA GTGGTTTAGA ACCCGTTCGC 
CGCCGCCCAG GCATGTATAC CGATACCACT AGACCTAATC ATTTAGGTCA AGAAGTTATT 
GATAACTCAG TGGATGAAGC GCTTGCCGGT CACGCACAAA ATATTAGTGT TATTTTAGAA 
AAAGATCAGT CACTTGAAAT AATTGATGAT GGTCGTGGTA TGCCTACCGA CATTCACCCT 
GAAGAGGGTG TGTCAGGGGT TGAGCTTATT TTCTGTAAGC TGCACGCAGG CGGTAAGTTT 
TCTAATAAAA GCTATCAGTT TTCAGGTGGT TTGCATGGTG TTGGTATTTC CGTAGTTAAT 
GCCTTATCAA CGCGTGTTGA TGTCAGTGTT AGACGAGACA GTAAAGTCTA TGAAATGGCA 
TTTGAAAACG GTGACAAAGT TGAAGAGCTG CGAGAAACAG GCACAGTAGG AAAACGAAAC 
ACAGGTACGA GTGTTAAATT TTGGCCCGAT GCTAGCTATT TTGATACTTC GAAATTTTCG 
GTGCGCCACC TTACGCATTT ACTTAAAGCT AAAGCGGTAT TATGCCCAGG CTTAACCATT 
AAATTTCATG ATAAAATTGA AGATAAAAAA TATCAGTGGT GTTATGAAGA TGGTCTTACC 
GATTACCTAA AAGATTCAGT AAAAGATTAT GTTTCATTAC CTGAAGACCC TTTTGTTGGC 
AGTTTTACTT CACAACTTGA GGCGGCCGAT TGGGCTGTTA CTTGGTTACC GGAAGGTGGT 
GAAAGTATAG GTGAAAGTTA TGTTAACTTA ATTCCAACCA TTGCCGGCGG TACACATGTT 
AATGGCATGC GCCAAGGGCT ACTTGAATCG ATGCGAGAAT TTTGTGAATT TCGTCATCTA 
TTACCACGCG GTGTCAAACT AACGCCGGAT GATATCTGGG ATAAATGTAG TTATATCCTA 
TCTATCAAAA TGCAAGACCC GCAATTTGCC GGGCAAACCA AAGAACGATT ATCGTCACGT 
CAATGTGCCG CTTTTGTTAG TGGCGTAGTC AAAGATGCTT TTAGTTTATG GCTAAACGAG 
CATACAGATA AAGCAGAACT CTTAGCTGAC TTTTGCATTA ATAACGCCCA AAAACGTATG 
CGTGCTAGTA AAAAAGTAGT GCGTAAAAAA ATCACTCAAG GACCCGCGTT ACCTGGTAAG 
TTAACTGATT GTGGTAGCCA AGATTTAGCG CGTACCGAGT TGTTTTTAGT GGAAGGTGAC 
TCAGCTGGCG GTAGTGCTAA ACAAGCTCGC GACCGAGAGT TTCAAGCGAT AATGCCACTG 
CGAGGTAAAA TCCTAAACAC CTGGGAAGTC GATTCAGGGC AAATTCTTGC TTCGGTAGAG 
GTGCACGATA TTTCAGTGGC ACTGGGCATT GACCCCGACA GTGATGATTT ATCTGAATTA 
CGTTACGGTA AAATTTGTAT CTTAGCGGAT GCCGATTCCG ATGGACTGCA TATTGCGACT 
TTGTTATGTG CCTTATTTAT GCAACACTTT TTACCTTTAG TACAAGCTGG TCATGTCTAC 
GTTGCCATGC CACCGCTTTA TCGCATTGAT ATTGGAAAAG AAGTTTTCTA CGCATTAGAT 
GAAGCAGAAA AAGACGGTAT TTTAGACCGA ATTGAAGCAG AGAAGAAACG TGGGAAGGTA 
AACGTGCAAC GCTTTAAAGG TTTGGGTGAG ATGAACCCAC CGCAATTACG TGAAACTACT 
ATGGATCCTA ATACCCGTCG ATTAGTACAG TTAACCGTTG ATGAACATAG TGAAACGATG 
GAATTAATGG ATATGCTACT TTCTAAAAAG CGTAGTCCAG ACAGAAAAAT TTGGTTGCAA 
AGTAAAGGTG ATATGGCAAT TGTTTAA 

 

Protein sequence

MTDQYNSDSI EVLSGLEPVR RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HAQNISVILE 
KDQSLEIIDD GRGMPTDIHP EEGVSGVELI FCKLHAGGKF SNKSYQFSGG LHGVGISVVN 
ALSTRVDVSV RRDSKVYEMA FENGDKVEEL RETGTVGKRN TGTSVKFWPD ASYFDTSKFS 
VRHLTHLLKA KAVLCPGLTI KFHDKIEDKK YQWCYEDGLT DYLKDSVKDY VSLPEDPFVG 
SFTSQLEAAD WAVTWLPEGG ESIGESYVNL IPTIAGGTHV NGMRQGLLES MREFCEFRHL 
LPRGVKLTPD DIWDKCSYIL SIKMQDPQFA GQTKERLSSR QCAAFVSGVV KDAFSLWLNE 
HTDKAELLAD FCINNAQKRM RASKKVVRKK ITQGPALPGK LTDCGSQDLA RTELFLVEGD 
SAGGSAKQAR DREFQAIMPL RGKILNTWEV DSGQILASVE VHDISVALGI DPDSDDLSEL 
RYGKICILAD ADSDGLHIAT LLCALFMQHF LPLVQAGHVY VAMPPLYRID IGKEVFYALD 
EAEKDGILDR IEAEKKRGKV NVQRFKGLGE MNPPQLRETT MDPNTRRLVQ LTVDEHSETM 
ELMDMLLSKK RSPDRKIWLQ SKGDMAIV