| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4173 |
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| Symbol | |
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| ID | 3523075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4391871 |
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| End bp | 4393763 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637286615 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_270824 |
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| Protein GI | 71282600 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCATG CGAGTCAAAT CGTTATCAGT ATTTCCCTTT TCCTTATGTC AATGGTTGCT
GTCGCTCAAA AGACGATTGA TATTAAAAAA TTTAATCTCG TTGCCGAACA AGTAACAGAA
TTGAAAAAGA CTGATCTAGT ACTTTCCCTT AAACAATTAA CTACTTTTGA AAATGTGCTT
AGTGCGCTCA CTGTTGAACA AAATTTGGTT TATTTCAAAC TACTTGCGGA AATACAAATT
GAACAAAATA GATATAGTGC GGCTAAAAAA ACGGCGAATG AAGGGCTCAT CATAGGGAGA
AGACTTGCTA GTCCAAGCAT ATTAATGAGT GAACTATTGT ACTTAAGAGG TTTTTCATTT
GAAAGTTTAG GGAATATTCC TCGGGCAACT AAAGAGTATA AAAAGGGCTT AGAAGTAGCG
GAGTCTTTAC ACAATAAGAT ACAAGTAGCT CTTGGGCTTA TTAACTTAGG CGCTATTGCT
TATTTAACGG ATAACTATAA GCGCTCTTTA GTTTTGCTTA ATGATGCTTA TAACATCGCA
GGACAAACTG ATGATGAAGA GCTTAAAGGT ACCGCTAACA CTGAATTGGG TATTCTCTAT
TCTCTGTTAC GACAAGGTGA TCAGTCTATG GCTTATTATC AGCAGTCATA TAAACACTTT
AAAAAGGCTG GCCTGTTATT ATCTGCACAT AACAGTTTGC ATAACATTGC CATCACTCAT
ATTCGCGAAA AACGTTACGA ACAAGCAATA ACCGTCTTTA AAACGATAAT AGCTGAATCA
AATAAAGATA CTTCAAGTGA CAGTATGTTT ACTGTTTATT CAGGTATGGC TTGGGCTCAT
TTAAAGAAAA AAGACAGTAA TATTGATGCC GCGCACCAAT ATTTATTGCT GGCCAAACAG
TATTTACAGT TCACTGAGAA AGTAGATTAC CGTTTACAGT TTTATTTTGA TGAAGCGAGT
GTTTTATACA AATTAGAGCG CTTTGATGAA GTATTGATAA GTATAGCTCG TATTGAAAAA
ATACTAGTTA ATCATGAGGA TATGCCTAAG AGAAAAAGAA AAGGTTATGT CAATATCATC
AACCTTAAAG CTAAGGTTTT TTATAAACAA GAAAAATTTA AACAAGCTTA TGAGACAAAG
TCTAGAGTGA TCGCGTTAAC AGAAAAACTC TATGAAAATG AAGATAATCG CTCCATTGCG
CAAGTTCGTC TAAAGCTTGA AGCCGAGCAG GCAGATAAGC AAAATGAAAT ATTAAACAAC
CAAAAATCCC GTTACGAAGC TAGCTTCAAT GAAGCAAAAT TAGAGAATGA AGAGCAGCGA
ATATATCTGA TTATTAGTGC TTTACTTGCC TTAGCTTTTG CGTGGGTGTT AGTTAAATTA
ATTCAAAGTC AGAAGAAACT AAAAGTCGCC TTGAACGTTG ATAAACTTAC CGGGACGGCT
AACAGGCGTC GCTTGATGGT AAAGTCTCAA CAGGCTTTTG AATTAGCAAA AGTTAAACAA
TATCATTTGA GTTTAATGAT GATTAATATC GATCATTTTA AAGGTATTAA TGACAGCTTA
GGCCATAGTA TTGGTGATGA AGTTTTAGCT AAAGTCGCTT TTATTGGCGC TAATATGGTG
CGAAAGAATG ATGTTTTTGG TCGTTTTAGC GGTGGAGAGT TTATGGTGTG TTTACCAAAA
ACCAACTTGA AGTTGGCAAT GGAAACAGCA GAGTGTATTC GCGCTGCTAT TAATGAACAT
ACATGGCAGC TTAACAATAT TGAAAAAATT AGCGTCAGTA TTGGTGTTGC TACCTTAACT
GATGATAGTG AATTAATCAG TTTAGTTAAA AGAGCTGAGG AACAACTTTA TCAAGCTAAA
GCCTCGGGGA AAAATAAGGT GTGTGCCCAA TGA
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| Protein sequence | MPHASQIVIS ISLFLMSMVA VAQKTIDIKK FNLVAEQVTE LKKTDLVLSL KQLTTFENVL
SALTVEQNLV YFKLLAEIQI EQNRYSAAKK TANEGLIIGR RLASPSILMS ELLYLRGFSF
ESLGNIPRAT KEYKKGLEVA ESLHNKIQVA LGLINLGAIA YLTDNYKRSL VLLNDAYNIA
GQTDDEELKG TANTELGILY SLLRQGDQSM AYYQQSYKHF KKAGLLLSAH NSLHNIAITH
IREKRYEQAI TVFKTIIAES NKDTSSDSMF TVYSGMAWAH LKKKDSNIDA AHQYLLLAKQ
YLQFTEKVDY RLQFYFDEAS VLYKLERFDE VLISIARIEK ILVNHEDMPK RKRKGYVNII
NLKAKVFYKQ EKFKQAYETK SRVIALTEKL YENEDNRSIA QVRLKLEAEQ ADKQNEILNN
QKSRYEASFN EAKLENEEQR IYLIISALLA LAFAWVLVKL IQSQKKLKVA LNVDKLTGTA
NRRRLMVKSQ QAFELAKVKQ YHLSLMMINI DHFKGINDSL GHSIGDEVLA KVAFIGANMV
RKNDVFGRFS GGEFMVCLPK TNLKLAMETA ECIRAAINEH TWQLNNIEKI SVSIGVATLT
DDSELISLVK RAEEQLYQAK ASGKNKVCAQ
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