| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4163 |
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| Symbol | |
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| ID | 3519099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4372749 |
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| End bp | 4373870 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637286606 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_270815 |
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| Protein GI | 71278297 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGAGC AAGAACAACA AAAAGATGCC ACAGTTCAAG AAGCAAAAAC GGTAATTGAA
ACACAAGATC CTGTGCGAAA AATTACTAAA TACGTGTTAA TCATAACAGC CTTGATTTTT
GTTTGGTACA TCATTGCCGA CAGACATGCG CCATGGTCAG ATCAAGCACG AGTGCAAACT
TATGTCATTC CAATTGTGCC GCAAGTTTCT GGTCGGGTAA TAGAAGTATT AGTCAAGCAA
GATCAGATAG TCGCTCCTGG CGATATATTA TTTAAAATTG ATCCAAGTGA TTATGAATTG
GCCGTAGAAA ATGCAGAAGC TTCTTTAGAA ATGGCTGGTC AAGAAATTGG TGCGGGTATG
GCATCAGTTG TTACTGCGCA GGCACAACTT GTTGTTGCAG AAACCAACGT TGAACATGTT
AATGCACAAA GTTCGCGTGT TTTTGAAATG GAAGACAAAA ATGTGCTTTC TCATTCTGAA
GGCGATAAAG CACGTGCCGC AATCAAGGCG AGTAAAGCTC AAGTAGTCAG TGCAGAAGCT
AACTTAGATA AAGCTAAGCA GTCTTTAGGT AAAGAAGGTA ATGCTAACCC TAGAATTCGT
GCCGCGATGG CGCAACTTAA AAAAACACAA TTGGACCTCA GCCGAACTGT TGTTCTCGCC
CCTTCTTATG GTGGCATCAC TAACTTGCAA ATCGATACTG GTTTTTATGC AAAAGCTGGC
GCTGCGTCAA TGACCTTTAT TGAAGGTAAT AATGCCTGGG TTCAAGTGAA TTTACGTGAG
AACAACTTAG CAAATTTAGC CATAGGAAAC TCGGTTGAAA TAGCTTTAGA TGTTAACCCT
GGTACTATAT ATCAAGGGAA AATAAGTAGT ATAGGATTTG CCGTTGATAC TTCTTCGACC
AGTGCTGTCG GTGGTTTAGC TACGGTTGAA TCAAAAACTG GCTGGCTTAG AGATGCGCAA
CGCTTTCCGG TAATGATTAC CTTTGATGAC GATAGTACTA AAGGTAAGCG TCGATTAGGC
GGTCAAGCAG ATGTACAAAT TTATACTGGT GATAATTGGT TCGTTAACAG TCTTGGTTGG
CTTTGGATTA GAGTATTAAG CATACTTTCT TATGTCTATT AA
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| Protein sequence | MSEQEQQKDA TVQEAKTVIE TQDPVRKITK YVLIITALIF VWYIIADRHA PWSDQARVQT
YVIPIVPQVS GRVIEVLVKQ DQIVAPGDIL FKIDPSDYEL AVENAEASLE MAGQEIGAGM
ASVVTAQAQL VVAETNVEHV NAQSSRVFEM EDKNVLSHSE GDKARAAIKA SKAQVVSAEA
NLDKAKQSLG KEGNANPRIR AAMAQLKKTQ LDLSRTVVLA PSYGGITNLQ IDTGFYAKAG
AASMTFIEGN NAWVQVNLRE NNLANLAIGN SVEIALDVNP GTIYQGKISS IGFAVDTSST
SAVGGLATVE SKTGWLRDAQ RFPVMITFDD DSTKGKRRLG GQADVQIYTG DNWFVNSLGW
LWIRVLSILS YVY
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