| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4155 |
|---|
| Symbol | |
|---|
| ID | 3521645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4367341 |
|---|
| End bp | 4368156 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637286598 |
|---|
| Product | short chain dehydrogenase/reductase family oxidoreductase |
|---|
| Protein accession | YP_270807 |
|---|
| Protein GI | 71281174 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAG TTGTTTTGAT CACAGGTGCA AGTTCTGGAA TGGGTGAAAT GACTGCCCGC
TTTTTACATG AAAATGGTTA TACCGTTTAT GCCGGTACGC GAGATAAAAA TTTGGCTACG
CCAGCGATCT CAGGTGTGAA CAATATTTAT CTTGATGTAA CAGATACCAA TTCAATGGAA
GCTGCAGTAA GCACAATTAT GGCCAAAGAA AGTAAGATTG ATGTATTAGT CAATAATGCT
GGGTATGGCC TTGTTTCTAG TGCTGAGGAA GCCACAGACG AAGAAATTTT CAAGCAGTTT
GACGTTAATG TTTTTGGCTT AATGAAAATG ACAAGAACTG TACTGCCTTA TATGCGTGAG
GCTAAGTCTG GCGTCATTAT TAATATCAGC TCTTTTCTTG GTAAAATGGG CTTGCCATTG
CTTTCTCATT ACAATGCCAG CAAATATGCG GTAGAAGGAT TTGTTGACTC CATTCGCTTT
GAAATGTCAC CTTATAATGT TCGCGTTCAC TCTATTCAAT CAGGCTTGTT TGGTACTAAC
TTTGTTAAAA AAGGCTTAGT CGCCAATACC AACACAACCA GTGAAAGTTC ACCTTATAAA
GATCTCGTTG CCCACTTTGT CCCTATTGTT GCAAAAGCGA TTAACGAAGG TCCAAGCCCG
CAACCTATTG CCGATACAGT CAAAGCCATC ATTGAAAATG AAGACTCACC TATTGCCATA
CCTGTTGGCA GTGAGGCGAC TTCTTTCGTA CCACTAAGAA AAGAATTATC AGATGAAGAT
TTTGAAGCTA AAATTAAAGA AACATTTGGT CTTTAA
|
|---|
| Protein sequence | MTKVVLITGA SSGMGEMTAR FLHENGYTVY AGTRDKNLAT PAISGVNNIY LDVTDTNSME
AAVSTIMAKE SKIDVLVNNA GYGLVSSAEE ATDEEIFKQF DVNVFGLMKM TRTVLPYMRE
AKSGVIINIS SFLGKMGLPL LSHYNASKYA VEGFVDSIRF EMSPYNVRVH SIQSGLFGTN
FVKKGLVANT NTTSESSPYK DLVAHFVPIV AKAINEGPSP QPIADTVKAI IENEDSPIAI
PVGSEATSFV PLRKELSDED FEAKIKETFG L
|
|---|
| |