| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4116 |
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| Symbol | rumA |
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| ID | 3519096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4330537 |
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| End bp | 4331946 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637286559 |
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| Product | 23S rRNA (Uracil-5-)-methyltransferase |
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| Protein accession | YP_270771 |
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| Protein GI | 71278294 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAATT ATTTTAAAGC AGCAGTAAAA CCAAAAACGT CTAATCAACG ATTGACCGTC
ACCGTTGATA AACTTGACAT GAATGGTGTA GGTGTTGCCC GGTGGCAAAA TAAGCCAATT
TTTATAGCGG GCGTTTTACC CGATGAAATT GTCGATGTAA AGGTTATTGA GCAAAAAAGT
AAGTATGCTC GTGCTAAACT TATTTCAATT GATAAACAAA GTGCTAGTAG AGTTATACCC
CAATGCCAGC ACTTTGGTCT TTGTGGAGGT TGTGATTTGC AAATGCTTGC TTTAGAGGAA
CAGTTACTTT TTAAGCAACA AAAAATTACT GACCTGTTTT CTCGAAGCTT TAGTACTCAG
AATATAACTC CTGAAATTAA TACGGCACAC TTGCCTTGGC AGGCTGCAAT AAAAAGCTCT
CCATGGCATT ATCGTCGTAA AGCCCGCATA GGCGTGCAAT TCGATAAAAA TGCTCAAGCG
ACCATTGGTT TTAGGCAAAA ATCAACCAAT CAACTAGCAG CAATTAAGTC ATGTCCTGTT
TTAGTTGAAC CGCTTAGTGC TATTTTCCCT TTACTAAAGA AGTTATTGGC ACAACTTACC
GTAAAATCTG CCATTGGCCA TATAGAAGTA ATTCAAGCTG ATATTAGTGA TACAAGCTCA
GCAGATAAAA TACAAAAAGA TAATCAAGTT GTAGTCGTTG TTCGACAGCT AAAACCTATG
AACGATACTG ACATCGGGCT TTGGCAATTA TATGCCCAGC GACATTGTTG GCATGTCATT
ATTGATGATG GTAACAAGCA ACTGCCGCTA GCTGATATCA AAGGGGGAGA CTCTTTTGAA
CTTTCCTATG AATTAACTGA TACCAGTAAA GTCTATTTTT CGAGTAATGA CTTTATACAA
ATTAATCATC AAGTTAATAA TGCCATGATA AGCCAAGCCT TAGCTTGGTT AAATATTTTA
GCTACCGATA ATGTTTTGGA CTTGTTTTGC GGTCTTGGAA ATTTCAGTTT AGCGCTGGCA
AAACACGCAA AACGCGTTGT TGGTGTTGAA GGAATGCAAA CCATGGTGGA CAAAGCCACT
CAGAACTCAC TTGTTAATGG ACTTGATAAT TGTCAGTTTT ACCAAGCTGA TTTAAATAGT
CATTGGCTAT TAGAGCCTTG GGTACAAGGA CAAGTTTTTG ATAAAGTATT GCTTGATCCC
GCAAGAGCGG GCGCAGAACA AGCGGTGAGT CAAATCGCTG AACTAAAAAT ACCCTGCGTG
TTATATGTTA GCTGCGATCC AGCAACCTTA GCGAGAGATA GTGCAATACT TGTTTCTAAG
GGGTATAAGC TTGAGAAAAT ATCGCTCATG GATATGTTTT CACAAACAAA GCATGTTGAG
ACTATGATAT TGTTTACTCA TACTAGTTAG
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| Protein sequence | MANYFKAAVK PKTSNQRLTV TVDKLDMNGV GVARWQNKPI FIAGVLPDEI VDVKVIEQKS
KYARAKLISI DKQSASRVIP QCQHFGLCGG CDLQMLALEE QLLFKQQKIT DLFSRSFSTQ
NITPEINTAH LPWQAAIKSS PWHYRRKARI GVQFDKNAQA TIGFRQKSTN QLAAIKSCPV
LVEPLSAIFP LLKKLLAQLT VKSAIGHIEV IQADISDTSS ADKIQKDNQV VVVVRQLKPM
NDTDIGLWQL YAQRHCWHVI IDDGNKQLPL ADIKGGDSFE LSYELTDTSK VYFSSNDFIQ
INHQVNNAMI SQALAWLNIL ATDNVLDLFC GLGNFSLALA KHAKRVVGVE GMQTMVDKAT
QNSLVNGLDN CQFYQADLNS HWLLEPWVQG QVFDKVLLDP ARAGAEQAVS QIAELKIPCV
LYVSCDPATL ARDSAILVSK GYKLEKISLM DMFSQTKHVE TMILFTHTS
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