| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4097 |
|---|
| Symbol | srmB |
|---|
| ID | 3520098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4311964 |
|---|
| End bp | 4313217 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637286540 |
|---|
| Product | ATP-dependent RNA helicase SrmB |
|---|
| Protein accession | YP_270752 |
|---|
| Protein GI | 161407972 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.872576 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAGC AATTCGATCT AGACTCAGAA TTATTAGCCA GTATTAATAA AATTGGTTAC
ACCAAACCTA CCTCAATTCA AGAACTTGTC ATCCCTCAAG CGATGGTTGG CAAAGACGTA
TTGGCATCAG CGCCGACTGG CACAGGTAAA ACTGCCGCAT TTTTATTACC TATTGCTCAG
CATTTATTAG ATTATCCACG TACCAAACCT GGTTTCCCGC GTGTATTAAT TTTAACGCCG
ACTCGTGAGT TAGCGATACA AATAGGTGAA GACAGTGAAC AGCTTACCGA GTTAACGAAA
ATTAAAACCG GCGTTATTAC CGGTGGTGTT AACTACGGTA GTCATGCTGA TATTTTAACG
AGCACAACCG ATATTTTAGT CGCCACACCA GGTAGATTAT TAGAATATAT TGAAAATGAA
CAGTTTGATG CCCGTGAAAT TGAGATATTA GTGTTAGATG AAGCTGACCG CATGCTCGAT
CTTGGCTTTA GTGAAACCAT TAATCGCATT GTTGCTGAAG CACGCTGGCG TAAGCAAACC
ATGTTGTTTT CAGCGACTCT TGAAAGTCCA GGCGTACAAC TTTTTGCCGA AGAAGTGCTT
AATGAGCCAG TTTTCTTAGA ATCAAAACCA TCTCGTAAAG AAAAAGCCGT CATTCATCAG
TGGCTTCATT TAGCAGATGA TGCGAACCAT AAGCTAAACC TACTAGTAAA CACCTTAAAA
CAAGAAGGCG TAGAACGTAC CGTTGTTTTT GCTAATAAGC GTGAAACCGT GCAATACCTT
TCAGGTAAGC TTTATGCTGA AGAGTTACCT TGTGTTTGGT TAGAAGGAAA AATGCCACAA
GATAAGCGTA ACAAAGCAAT AGAACGTTTT AAAAAAGGTG AAGTTAAAGT GTTGGTGGCA
ACAGATGTTG CAGCACGTGG TCTTGATATA GATGATATCA GTCATGTTAT TAATTTTGAT
ATGCCACGTA AGGTCGATAT TTATATTCAT CGAATTGGCC GTACTGGTCG CGCAGGTAAA
AAGGGTACAG CTATTTCCTT AGTTGAAGCC CATGATATGG GTGTTATTGG TAAAATAGAA
CGTTATACCA AAGAACGCCT GTCACGCCGA TTTATTCAAG AGTTAAGACC AAAAAACAAA
GAATCTCGCG TGGTAAATAA AAAGGCAAAA ATTAAACTTA CGACCTCTCA GAAAAAAGCT
AAAACCAAAA AACAAGTGAA GAAAAAGGCT AAGCGAGCAA AAGCAGCTAA GTAA
|
|---|
| Protein sequence | MFEQFDLDSE LLASINKIGY TKPTSIQELV IPQAMVGKDV LASAPTGTGK TAAFLLPIAQ
HLLDYPRTKP GFPRVLILTP TRELAIQIGE DSEQLTELTK IKTGVITGGV NYGSHADILT
STTDILVATP GRLLEYIENE QFDAREIEIL VLDEADRMLD LGFSETINRI VAEARWRKQT
MLFSATLESP GVQLFAEEVL NEPVFLESKP SRKEKAVIHQ WLHLADDANH KLNLLVNTLK
QEGVERTVVF ANKRETVQYL SGKLYAEELP CVWLEGKMPQ DKRNKAIERF KKGEVKVLVA
TDVAARGLDI DDISHVINFD MPRKVDIYIH RIGRTGRAGK KGTAISLVEA HDMGVIGKIE
RYTKERLSRR FIQELRPKNK ESRVVNKKAK IKLTTSQKKA KTKKQVKKKA KRAKAAK
|
|---|
| |