| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4078 |
|---|
| Symbol | gshA |
|---|
| ID | 3518481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4288123 |
|---|
| End bp | 4289712 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286521 |
|---|
| Product | glutamate--cysteine ligase |
|---|
| Protein accession | YP_270733 |
|---|
| Protein GI | 71278731 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2918] Gamma-glutamylcysteine synthetase |
|---|
| TIGRFAM ID | [TIGR01434] glutamate--cysteine ligase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.479247 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACACTAT CATTAACTGA TTATATTGGC GCTTTTAGCC AAAATAAAAA CTTGGCTGCC
GTTGCCGGTA TTGGACGCGG TATAGAGCGA GAAGCCTTGA GAATATTACC AGAGGGTAAG
CTATCGGAGC ATGGTCATTA TCATCAACTT GGTTCCGCGC TCACGCATGG ACAGATAACT
ACTGATTACT CGGAAACCCT GCTTGAATTC ATTACTCCGG TTAGTTTTTC TCCAGAGCAA
ACCATTGCAC AACTTCAAGA TATTCAAAAA TATACCTTTG ATAACATTGA AGGTGAATTA
TTGTGGCCAA TGAGCATGCC TTGCTTTGTT GATGATGCTG AAAAAATACC CTTAGCGCAA
TACGGCAGTT CAAATATCGG CACCATGAAG ACAGTTTATC GTCAAGGTTT GAAAAATCGC
TACGGCTCAA TGATGCAAGT TATTTCAGGC ATACATTTTA ACTTTTCATT CTCTCAAGAC
TTCTGGCAAG TGCAGCAAGA TTTGCATCAG TCATCCGGTG AAAAGTCATT ACCTATTAAT
GATTTTATTT CTGAACGCTA CTTTTCTATC TTAAGAAATT ACAAACGATT CTGTTGGTTA
ATCCCTTACT TATACGGAAG CTCTCCAGCA ATCTGTGGAT CATTTTTACA AGGTAAAGAA
CATAAATTGC CTTTTAAGAA ATCTCCATTT GGCGCGCTTT ACCTCGAACA TGCCACCTCG
TTGCGTATGA GTGACTTAGG TTATACCAGC TCTGAGCAGT CAGCACTGAA AATTTGTTAT
AATAATTTAG CTGATTATGT TGATGGTGTT CAACAGGCTA TAAAACTTAA ATCTAACGAC
TTTGCCAGCC TTGGTGTAAA AGTTGATGGT CAATACCAAC AGCTTAACGA TAACGTACTA
CAAATTGAAA ATGAGCTGTA CGCACCTATT CGCCCTAAAC GAGTTGCTAA AGCAGGTGAA
AAACCCTCAG ATGCTCTAGG AGAGCGTGGT GTTGAATATA TTGAAGTGAG GGCGCTTGAT
GTAAATCCTT TTTCAGATAC AGGCATTAGC CTTGAGCAGG TTCACTTTTT AGATATATTT
ATAACTTATT GTGCTTTTAT TGATAATAAA GAGTTTGATT GTACACGCCA GAAATTTCAT
GAAGATAACA TGAATGCAGT GGTTCTTCGT GGTCGAGATC CTGAATTATT ACTTAGCGAT
GCTAATTGTA GTGGTGAAGT TACGCTTAAA TCGGTTCCTG AGTGGGGCAA TGAATTATTC
GAGCAGATGA AGCAAGTTGC ACAACTGTTA GATAAATCAT ACCAAACCAG TAAATACAGT
GAAGCTATTG TTCGTGAACA AGCTAAAATT AATGATTCAA GCTTAACACC TTCCGCACAG
TTGTTATCGA TTATTCAAGA GCAATCTTTA TCGCAATTTG CTTTAGATAA AGCGATTGAA
TATCAACGAG AAGCTAAAGT GCGTGATTAT CAATCCTATG ATCAAGCATT TTTTGATGCA
AGCGTTCCTG ACTCTCATAA AGCTCAAGCA GATATTGAAG CAGGTGACGA ACTAAATTTT
GATGACTTTT TATCAGATTA TTTCGCATAA
|
|---|
| Protein sequence | MTLSLTDYIG AFSQNKNLAA VAGIGRGIER EALRILPEGK LSEHGHYHQL GSALTHGQIT
TDYSETLLEF ITPVSFSPEQ TIAQLQDIQK YTFDNIEGEL LWPMSMPCFV DDAEKIPLAQ
YGSSNIGTMK TVYRQGLKNR YGSMMQVISG IHFNFSFSQD FWQVQQDLHQ SSGEKSLPIN
DFISERYFSI LRNYKRFCWL IPYLYGSSPA ICGSFLQGKE HKLPFKKSPF GALYLEHATS
LRMSDLGYTS SEQSALKICY NNLADYVDGV QQAIKLKSND FASLGVKVDG QYQQLNDNVL
QIENELYAPI RPKRVAKAGE KPSDALGERG VEYIEVRALD VNPFSDTGIS LEQVHFLDIF
ITYCAFIDNK EFDCTRQKFH EDNMNAVVLR GRDPELLLSD ANCSGEVTLK SVPEWGNELF
EQMKQVAQLL DKSYQTSKYS EAIVREQAKI NDSSLTPSAQ LLSIIQEQSL SQFALDKAIE
YQREAKVRDY QSYDQAFFDA SVPDSHKAQA DIEAGDELNF DDFLSDYFA
|
|---|
| |