| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4071 |
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| Symbol | |
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| ID | 3520407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4278420 |
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| End bp | 4280045 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637286514 |
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| Product | GGDEF/EAL domain-containing protein |
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| Protein accession | YP_270726 |
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| Protein GI | 71279944 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0381556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTATAC ATAAAGTTAG CAAAGCTGTC GCTCGCAGCT CAGTGAGTCA GACTGAAGAC
GTAGGGTTTT TTCAACGTTT TGCTATGGTA TTTGAAAGTC TGTTTATCGT GCTTATTACT
GCGGCACTGA TGTGGTCAAC ACGTTTTTTC GATATCACTG AATTTGTAAT GAACTTATCT
AGCAGTCAAC CGCATTGGCA ATTAGGTAAC ATTATCACGC TAGTTAGCAT TTCAGCCTTA
GGCTCACTGG TTTTACTCAT TCGTTATAGT TTGCATTTAC GTAAAAAAAT GAAGCTACAA
TTTGTTGCTG AAGAGGAAAT TAAAAGACTG GCTTTTTTTG ATAGTTTAAC TAATTTACCT
AACAAAGAAC TTTGTCAAGA TCGTATCGAA CAGGCTCTAG CGCGTGCGGC AAGAAACAAT
ACTTCAATTG CCGTATTATT TATTGGCATT GATGACTTTA AAGCCGTTAA TGATCAACAA
GGTCATGTGG GCGGCGATAA GCTTTTGAAA CAAATAGCTA AACGTTTATC TGGTCAATTA
CGTTCAGGTG ATACCTTAGC GAGAATAACT GGGGTGGAAT TTATTATCAT ACTCGAGACT
ATTTCGCCTA AAGATAATAT AAATATGTTT GCTGACAAAA TATTGTTAAA GCTCACTAAA
TGTTATCGAA TTGCCATGCA AGAGGTCTAT ATCACGGGTA ATATCGGAGT TGCTTTATAC
CCAAGTGATG GTGAATACGG TAAAGAGTTA ATTCAACATG CAGATACGGC GATGTGCTTT
GCCAAAGAAA AAGGCCGTAA TCGCCTAGCT TTTTTCTCTA AAGAGCTACA AGAGCAAGTT
AATATCAAGA AGAAAATTGC TGAACAATTA CGAGGTGCAA TGGAAAGGGA TGAATTAGTC
CTACACTACC AACCTATCAT TGCAACCCAC TCTAATGAAA TTATTGCTGT AGAGGCCTTG
TTACGATGGA ATAATGAGTT ACTCGGTGAT TTGGCGCCAG ATGTCTTTAT TCCGATAGCA
GAAGAGATTG GCATCATTAC AAAAATTGGT GATTGGGTAC TTGCACAAGC TTGCCTGCAA
AATAAAACCT GGCAGCAGCA GGGTTATCCT TGCATCGTAA TGACCATTAA CATGTCAGTG
ATGCAATTAG CTATTAGCAA TTATGCCCGT ACGGTATCCA CGTCTCTTAC CGAAACAAGT
TTGGAGCCTC AATACTTGGA GTTAGAGTTC ACAGAGAACA CGCTGATGAA AGATGCAAAA
CAATCGATAG TGCAACTTAG AGAGTTGAGT GCTTTAGGTG TTTCTATTGC ACTTGATGAT
TTTGGCACCG GTTATTCGTC TATCAAACAT TTAGCTAAGT TCAAGCTCAA CAAATTAAAG
ATTGATGGTA GTTTTATAAA ACATATTCCT GAAAGTGCAG GAGATATCAT TGCTACAAGA
GCCATCATTG CTCTAGCTAA ACAACTAAAA CTACACGTAA CCGCTGAAGG CGTTGAAACA
GCCAATCAAT GTGAGTTCAT GATGACTAAT AATGTTGACT CTATGCAGGG TTATCACTTT
AGCCGCCCCG TAGCTGCCAA AGCCTTTGAA CTACTCTTAC AATCCCCGTC ATGGCAATCA
AATTAA
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| Protein sequence | MAIHKVSKAV ARSSVSQTED VGFFQRFAMV FESLFIVLIT AALMWSTRFF DITEFVMNLS
SSQPHWQLGN IITLVSISAL GSLVLLIRYS LHLRKKMKLQ FVAEEEIKRL AFFDSLTNLP
NKELCQDRIE QALARAARNN TSIAVLFIGI DDFKAVNDQQ GHVGGDKLLK QIAKRLSGQL
RSGDTLARIT GVEFIIILET ISPKDNINMF ADKILLKLTK CYRIAMQEVY ITGNIGVALY
PSDGEYGKEL IQHADTAMCF AKEKGRNRLA FFSKELQEQV NIKKKIAEQL RGAMERDELV
LHYQPIIATH SNEIIAVEAL LRWNNELLGD LAPDVFIPIA EEIGIITKIG DWVLAQACLQ
NKTWQQQGYP CIVMTINMSV MQLAISNYAR TVSTSLTETS LEPQYLELEF TENTLMKDAK
QSIVQLRELS ALGVSIALDD FGTGYSSIKH LAKFKLNKLK IDGSFIKHIP ESAGDIIATR
AIIALAKQLK LHVTAEGVET ANQCEFMMTN NVDSMQGYHF SRPVAAKAFE LLLQSPSWQS
N
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