Gene CPS_4068 details

Gene Information

• Locus tag: CPS_4068
• Symbol: rimM
• ID: 3522124
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 4277437
• End bp: 4277967
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637286511
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_270723
• Protein GI: 71281652
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.199941
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGTACAG AAGAAAAAAA AATCATCTTG GGTAAAGTAG GCGCAGTTTA CGGAATCAAA 
GGCTGGTTAA AAATTCATTC ATTCACTGAT GAAACTGAAG CCATACTTGA CTATTTCCCT 
TGGTCATTAA AATTAGGGAA TAATACACAA ACAGTTGAAA TAACTGATTG GCGCAAGCAT 
AACAAAGTAC TTATTGTGAA AGTGGCTGGT ATTGATGACA GAGATGAAGC GCAAGCATTA 
GTCGGCTCTG AAATATTAAC CAATGAAGCA GCGTTGCCAG AATTATCGGA AGATGATTTT 
TACTGGCGCG ATTTAATAGG TATGTCTGTT GTGACTAACA AAGGTTACGA CCTGGGTGTA 
GTTACAGACA TGATGGAAAC TGGCGCTAAT GATGTACTGG TTGTGAAAGC TAATTTAAAA 
GATGGCTTTA GTAAAAAAGA ACGGTTAATC CCGTACCTTT TTGAACAAGT AATTGAGTCG 
GTTAGCATTG AAAATAAACA AATTTGTGTT GACTGGGACC CGGGTTTTTA A 

 

Protein sequence

MSTEEKKIIL GKVGAVYGIK GWLKIHSFTD ETEAILDYFP WSLKLGNNTQ TVEITDWRKH 
NKVLIVKVAG IDDRDEAQAL VGSEILTNEA ALPELSEDDF YWRDLIGMSV VTNKGYDLGV 
VTDMMETGAN DVLVVKANLK DGFSKKERLI PYLFEQVIES VSIENKQICV DWDPGF