| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4054 |
|---|
| Symbol | |
|---|
| ID | 3520975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4264798 |
|---|
| End bp | 4265526 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637286498 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_270710 |
|---|
| Protein GI | 71280509 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3248] Nucleoside-binding outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATT TTAAAAATAT GGCACTGGCG ATGGTATCGA TTTGTAGCAC TCTTACATTT
AGCCCTATGG CGAGCGCTGA GATGCAATGG AGCGACTTTA GTCTCAGTTA TCTTACCAGT
GATCAATATG AAGTGGGTGA CAATAGCCGT CAATTCTTGA CCGTAGAACA TGCCAGTGGC
CACACATGGG GTGATACCTT CTTCTTTTTG GATCGTTCTA AATATGATGA TGGCACTCTG
GAAAATTATG CTGAGTTTTC TCCGCGACTG AGTCTTGGCT ATGTCACTGG TAACGATCTG
TCGTTTGGCA TTGTCAGTGA CGTGTATGTT GCTAGCACTT GGGAGATGGG TGAGTCATTT
GATAATTACC TAATTGGTCT GGGTGTAAGC CTTAATATAC CTGGCTTTAA TTACTTCACC
GCCAATGTTT ATCAGGCCAA TAACATGTTG TGGGACAACG ATCAAATGTT GACCATCACC
TGGAGTAAAG GCTTTAAATT GGGCAGTGCT GATTTCCTAT ATGATGGTTT TATTGATTGG
AGTACGTCTT CAGATAGTCA GGCCTCTGAA ATGAATTTCA CCTCACAGCT GAAATATAAT
GTAGGTCAGT TATTTGATTT AAAATCGCCT GTTTATGTGG GTATTGAGTA CGCTTACTGG
AACAATAAAT TTGGCATATC AGGTGTGGAT GAGCGTAGCG TATCATTGCT GGCTAAATGG
CATTTCTAA
|
|---|
| Protein sequence | MSNFKNMALA MVSICSTLTF SPMASAEMQW SDFSLSYLTS DQYEVGDNSR QFLTVEHASG
HTWGDTFFFL DRSKYDDGTL ENYAEFSPRL SLGYVTGNDL SFGIVSDVYV ASTWEMGESF
DNYLIGLGVS LNIPGFNYFT ANVYQANNML WDNDQMLTIT WSKGFKLGSA DFLYDGFIDW
STSSDSQASE MNFTSQLKYN VGQLFDLKSP VYVGIEYAYW NNKFGISGVD ERSVSLLAKW
HF
|
|---|
| |