| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3993 |
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| Symbol | |
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| ID | 3518805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4188889 |
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| End bp | 4191582 |
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| Gene Length | 2694 bp |
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| Protein Length | 897 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637286439 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_270651 |
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| Protein GI | 71278588 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.494791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAA AATTCAAACT ATCCATTTTA ACTCTAGCAC TTGCTACAGG CTGTGGTTTA
TCAACCGCCT ATGCAGAAAC TGCACTAGAA GAAAATGCTG ATGGGCAAGC CATGGAAGAG
GTGATTGTCA AAGCAAGTCG CTTAAAAGGC ACTGCTAGTG CGGTCATGGA AGAGCGTAAA
AATCAGGCCT TTATTGCTGA TATCCTCGGC GCTGAGCAAA TAGCACGTAC CGGTGATTCA
GATGCGGCTG CGGCGTTACG TCGTGTTACC GGTATTACCT TGGTGGATGG AAAATACATT
TATGTGCGTG GTTTAGGTGA GCGCTTTTCA AGTACGCAAC TAAATGGCGC GGCAGTACCT
AGCCCAGATC CAACGCGAAC GGTTATTCCA CTCGATTTAT TTCCTTCATC AATCATTGAA
TCATTGTCGG TACAAAAATC CTATTCTGCT GCTATGCCTG CCCATTTTGC TGGCGGTAAT
GTCGATGTGC GTTTGAAAAC AATTCCTTCT GACTTTGTTT TTTCCATGCA AGGTAAGCTT
GGCGGTAACA CCAATAACTT TGATGATGGT TTATCCTATA ATGGCGGAGA CGACGATTGG
TATGGTAAAG ATGATGGTAC TCGTGCAGCA CCAGCGTCAT TGCAAAAATT GTGGAAAAGT
CATAGCCCTA TAAATGATTT ATCACAGCAA GATAACCGTG AGATTGCTGC GCAGATGAAT
CGCGATTATG ATCCAAAAGC CACTAGCATT AACCCGAATA CTGGCTTTGA TGTCACATTA
GGTAATCGAT TCGACTTTGA TGACTTTCGA TTAGGTTTCC TTACCGCGGT TTCCTATGAC
AATAAATGGG AAGTATCAGA AGAATACGAA GGACAGGATT TCACCTATCA AGAAGGTGTT
GATGGCGAAG ACAGCAGTTG GGCTTTAGTA CGTGGTTCCG ATGATATTAA ATCTACTGAA
CATACGGTAC GCTTTTCTGG CATGTTCAAC GTTGGCTTAG AATTTCAACG TGATCACCGC
ATTGATTTCA GCTCGTTAAT TTTGCACGAT ACCCGTGATG AAATACGCGA TAAACTCGGC
AACACCAACA ATGTCACTAT TAGTGACGGT TTGCGAGTAC GTGATAGCGA CGTTATTTAT
GAAGAGCGAG AAATGATCGC GAATCAAATC AGAGGTACAC ATAACTTCTC AGGACTTTGG
AACTTAGGTG CTGATTGGTT TTACTCAGAT GCGCGCTCCA ATCGCTATGC TCCTGGCAAT
ATCTCAACAC GCTATATCAT TGCCGATGGT TCAAATGGTC AACCTGAAGA TGGCATTTTT
GATCCAATCA ATGAGAGCTC TTTACGTAAA GCGACCACTT CTTCTCGTTA TAGTTTTCAA
AACTTAGACG ATAATGTTGA AAACTATGGT TTTAGTTTTT CATTGCCAGT TAACTTTAGC
AATGTAGAAC TAGAGATAAA AGCAGGCGGG AACTTTATTG AAAAGACACG TGACGCTATG
GCAAGACGCA TAGATGTCAA CACACTTGCT TTTGATAACC TAGACCTAAC TGGCCATCAA
ATGGGCGTCA TTTTAAATGA TGATGTTATG CTAAATCACC CATTATCGGG CAATGAATTA
ATTATTCGTG ATACGACTGC TAGCGGAGAT GATTACTACT CTGCTCAACT GGTTGATGCT
TACTTTATTG ATACCGATTT TTTCATCGCG CAAAAGTGGC GAGTAAACTT AGGATTGCGT
TATGAAGATT TTCGCCAAGT CGTTGCCCCG TTAGATCCCG CAACTGGTAA GTTTGAGTTA
CCTGCAAAGC CGACGAATGA AGATTTAGCA GCACTTGCCT TTAAAGATGA TGATGTTTTT
GGTGCACTAG CATTCACTTA TTTGCTTGAC GATGAAATGC AGTTTCGTGC TTCTTACGCA
CAAACGACTA TTCGTCCAGA TATCCGAGAA GTCGCGCCGG CGACCTACAT TGATCCCCTT
ACTGGTTTCC CTATTGGTGG AACGCCAAGT GTAACCAGTA CCGCTATTGA TAACTATGAT
TTACGTTGGG AGTGGTACTT ACCTGCGGGA GATAACCTTT CTGTAGGTTT ATTCTACAAG
GACATGGATC AGCCAATAGA AGCGGTACAA TCACCTGCAC AAGATGGCCC ACCATTAATC
AGAATTGCTA ATGCAGAAGA CGGTTATGTG TACGGACTTG AGGTAGAGTT TTTAAAAGAC
TTTGGCTTCT TAGGTGATTT TGCGGGTATG AACGGGACAG ACTTCTTCTT ATCGGGTAAC
TTTACGGTAA GTGAGTCAGA AATAAATATT GATACCCAGA ACGTGGTTGA ACAAACCGGC
GTTTCTACCT CAATTACTAA TCCAACACGT GCCATGACAG GTCACTCACC TTGGGTAGTA
AATATGAACT TAGGTTGGGA TGCGCCGAAT GGTAATCACA GTGCTACCCT TGCTTATAAC
GTGTTTGCTG AGCGTATTAT TATACCTGGC ATTGACGGTA AGGATGATGC TTATGAGCAA
CCATTCCATT CACTTGATAT GGTCTATACC TACTATCCTA CTTACTCATC AACATTGAAA
TTTAAGGTGC AAAACATCTT AAATCAGAAA AAAGAAATTG AGTTTGAAGA TACCTTAATG
CGCAGTGAAA CCAAAGGTGT TGCCTTTGAA GTTGCCTTGA AGTGGGACTT TTAA
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| Protein sequence | MKTKFKLSIL TLALATGCGL STAYAETALE ENADGQAMEE VIVKASRLKG TASAVMEERK
NQAFIADILG AEQIARTGDS DAAAALRRVT GITLVDGKYI YVRGLGERFS STQLNGAAVP
SPDPTRTVIP LDLFPSSIIE SLSVQKSYSA AMPAHFAGGN VDVRLKTIPS DFVFSMQGKL
GGNTNNFDDG LSYNGGDDDW YGKDDGTRAA PASLQKLWKS HSPINDLSQQ DNREIAAQMN
RDYDPKATSI NPNTGFDVTL GNRFDFDDFR LGFLTAVSYD NKWEVSEEYE GQDFTYQEGV
DGEDSSWALV RGSDDIKSTE HTVRFSGMFN VGLEFQRDHR IDFSSLILHD TRDEIRDKLG
NTNNVTISDG LRVRDSDVIY EEREMIANQI RGTHNFSGLW NLGADWFYSD ARSNRYAPGN
ISTRYIIADG SNGQPEDGIF DPINESSLRK ATTSSRYSFQ NLDDNVENYG FSFSLPVNFS
NVELEIKAGG NFIEKTRDAM ARRIDVNTLA FDNLDLTGHQ MGVILNDDVM LNHPLSGNEL
IIRDTTASGD DYYSAQLVDA YFIDTDFFIA QKWRVNLGLR YEDFRQVVAP LDPATGKFEL
PAKPTNEDLA ALAFKDDDVF GALAFTYLLD DEMQFRASYA QTTIRPDIRE VAPATYIDPL
TGFPIGGTPS VTSTAIDNYD LRWEWYLPAG DNLSVGLFYK DMDQPIEAVQ SPAQDGPPLI
RIANAEDGYV YGLEVEFLKD FGFLGDFAGM NGTDFFLSGN FTVSESEINI DTQNVVEQTG
VSTSITNPTR AMTGHSPWVV NMNLGWDAPN GNHSATLAYN VFAERIIIPG IDGKDDAYEQ
PFHSLDMVYT YYPTYSSTLK FKVQNILNQK KEIEFEDTLM RSETKGVAFE VALKWDF
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